miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 86027 0.71 0.911641
Target:  5'- -cCGGGGAGGGCAGGgCCGcggggggggcggGCuCGUCCc -3'
miRNA:   3'- caGCUCUUCCUGUUUgGGU------------UG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 22723 0.71 0.923375
Target:  5'- -gCGGGggGcGACGAcCCCGacGCCGcCCg -3'
miRNA:   3'- caGCUCuuC-CUGUUuGGGU--UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 88061 0.71 0.923375
Target:  5'- -aCGGGcguGGGCAGGCCCcuGGCCG-CCa -3'
miRNA:   3'- caGCUCuu-CCUGUUUGGG--UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 82151 0.7 0.928866
Target:  5'- gGUCGccGAGGGAC-AGCCCcgUCGUCUc -3'
miRNA:   3'- -CAGCu-CUUCCUGuUUGGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 105715 0.7 0.928866
Target:  5'- cGUCGGGgcGG-CAAGCCCuGCCauagCCa -3'
miRNA:   3'- -CAGCUCuuCCuGUUUGGGuUGGca--GG- -5'
5989 5' -51 NC_001806.1 + 1700 0.7 0.934105
Target:  5'- cGUCGGugguccccGAGGcCGccGCCCGGCCGUCCa -3'
miRNA:   3'- -CAGCUc-------UUCCuGUu-UGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 73141 0.7 0.938606
Target:  5'- -gCGAGGAcGACGGGCCCAcgguuccGgCGUCCu -3'
miRNA:   3'- caGCUCUUcCUGUUUGGGU-------UgGCAGG- -5'
5989 5' -51 NC_001806.1 + 16482 0.7 0.939093
Target:  5'- gGUCGAGggGGGCuuGCC--GCCGcggCUg -3'
miRNA:   3'- -CAGCUCuuCCUGuuUGGguUGGCa--GG- -5'
5989 5' -51 NC_001806.1 + 86085 0.7 0.939093
Target:  5'- cUCGcGGAGGGCGgccAGCCgcgCGACCGUCUc -3'
miRNA:   3'- cAGCuCUUCCUGU---UUGG---GUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 23279 0.7 0.94337
Target:  5'- -gCGGGAGGGgcgcaagcGCAAgagucccggcccgGCCCGGCCGcCCg -3'
miRNA:   3'- caGCUCUUCC--------UGUU-------------UGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 59024 0.7 0.943832
Target:  5'- ----cGAGGGACGcgUCCGACgCGUCCu -3'
miRNA:   3'- cagcuCUUCCUGUuuGGGUUG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 148094 0.7 0.948324
Target:  5'- -cCGAGggGGGCGcuguCCgAGCCGcggCCg -3'
miRNA:   3'- caGCUCuuCCUGUuu--GGgUUGGCa--GG- -5'
5989 5' -51 NC_001806.1 + 58088 0.7 0.948324
Target:  5'- -cCGGcuGAAGGAgAccccuggcuauGACCCAGCCaGUCCa -3'
miRNA:   3'- caGCU--CUUCCUgU-----------UUGGGUUGG-CAGG- -5'
5989 5' -51 NC_001806.1 + 20003 0.7 0.948324
Target:  5'- -cCGAGccGGGGcgucGCGAugCCGacGCCGUCCg -3'
miRNA:   3'- caGCUC--UUCC----UGUUugGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 18380 0.7 0.952571
Target:  5'- gGUgGAGAAGcGCAuuuuCCggCAGCCGUCCa -3'
miRNA:   3'- -CAgCUCUUCcUGUuu--GG--GUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 150090 0.69 0.958866
Target:  5'- --aGGGGAGG-CAGGCCCAccgcggggcggccCCGUCCc -3'
miRNA:   3'- cagCUCUUCCuGUUUGGGUu------------GGCAGG- -5'
5989 5' -51 NC_001806.1 + 109042 0.69 0.960345
Target:  5'- uUgGAGggGGcuCAGGCCCAACgCGgccCCg -3'
miRNA:   3'- cAgCUCuuCCu-GUUUGGGUUG-GCa--GG- -5'
5989 5' -51 NC_001806.1 + 46962 0.69 0.962845
Target:  5'- cUCGGGAAcGGACGGgguucccgcuGCCCAcuuccccccauaagGuCCGUCCg -3'
miRNA:   3'- cAGCUCUU-CCUGUU----------UGGGU--------------U-GGCAGG- -5'
5989 5' -51 NC_001806.1 + 24594 0.69 0.963539
Target:  5'- -gCGAGGAGGA--GGCCCAcucgcacGCCG-CCu -3'
miRNA:   3'- caGCUCUUCCUguUUGGGU-------UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 94344 0.69 0.967192
Target:  5'- --gGAGAccauGGGCcuGGCCCGACCcuGUCCg -3'
miRNA:   3'- cagCUCUu---CCUGu-UUGGGUUGG--CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.