miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 49557 0.83 0.338779
Target:  5'- -aCGAGGAGGACGAcuACCCGgaaGCCGUCg -3'
miRNA:   3'- caGCUCUUCCUGUU--UGGGU---UGGCAGg -5'
5989 5' -51 NC_001806.1 + 136892 0.79 0.559771
Target:  5'- -cCGGGGcugGGGugAAccuuuACCCAGCCGUCCu -3'
miRNA:   3'- caGCUCU---UCCugUU-----UGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 132559 0.76 0.705753
Target:  5'- -cCGGGggGGACccguCCCGuacuuuGCCGUCCu -3'
miRNA:   3'- caGCUCuuCCUGuuu-GGGU------UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 56682 0.75 0.723111
Target:  5'- gGUCGGGggGGACGggGGCCCGggaACCccgggucgcucuggGUCCu -3'
miRNA:   3'- -CAGCUCuuCCUGU--UUGGGU---UGG--------------CAGG- -5'
5989 5' -51 NC_001806.1 + 115075 0.75 0.726151
Target:  5'- -gCGGGAaaccgccuGGGGCcGGCCCAGCCcGUCCc -3'
miRNA:   3'- caGCUCU--------UCCUGuUUGGGUUGG-CAGG- -5'
5989 5' -51 NC_001806.1 + 74062 0.75 0.746208
Target:  5'- --gGAGGAGGuGCGGACCCAGgcCCGUCg -3'
miRNA:   3'- cagCUCUUCC-UGUUUGGGUU--GGCAGg -5'
5989 5' -51 NC_001806.1 + 140537 0.75 0.756083
Target:  5'- -aCGGGGacggcGGGGCAGAgCCGcCCGUCCg -3'
miRNA:   3'- caGCUCU-----UCCUGUUUgGGUuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 71928 0.75 0.765844
Target:  5'- gGUCGAGggGGGCGAguggacgcGCgCGACCGcgggCCc -3'
miRNA:   3'- -CAGCUCuuCCUGUU--------UGgGUUGGCa---GG- -5'
5989 5' -51 NC_001806.1 + 28763 0.74 0.78498
Target:  5'- gGUCGGGAuccaaAGGACGGACCCAgACCa-CCu -3'
miRNA:   3'- -CAGCUCU-----UCCUGUUUGGGU-UGGcaGG- -5'
5989 5' -51 NC_001806.1 + 70492 0.74 0.794336
Target:  5'- gGUCG---GGGACAcGCCCGACCG-CCu -3'
miRNA:   3'- -CAGCucuUCCUGUuUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 20788 0.73 0.821445
Target:  5'- -aUGAGcccGAGGACGc-CCCGAUCGUCCa -3'
miRNA:   3'- caGCUC---UUCCUGUuuGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 55391 0.73 0.846925
Target:  5'- aUUGGGggGGACGGACCCAuggaguaaCG-CCa -3'
miRNA:   3'- cAGCUCuuCCUGUUUGGGUug------GCaGG- -5'
5989 5' -51 NC_001806.1 + 53781 0.72 0.885208
Target:  5'- cGUCGAcGAGccgcaGGCAGGCCCGaauGCCGUCUc -3'
miRNA:   3'- -CAGCUcUUC-----CUGUUUGGGU---UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 113297 0.72 0.885208
Target:  5'- --gGGGggGGACGuuccCCCGGCCGgCCc -3'
miRNA:   3'- cagCUCuuCCUGUuu--GGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 11332 0.72 0.89218
Target:  5'- gGUCcacGggGGGCGucggaAGCCCAGCCGcCCc -3'
miRNA:   3'- -CAGcu-CuuCCUGU-----UUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 49291 0.72 0.89218
Target:  5'- -aCGGGAAGGcccGCGAGCCCGACgacggcgcgCGUCg -3'
miRNA:   3'- caGCUCUUCC---UGUUUGGGUUG---------GCAGg -5'
5989 5' -51 NC_001806.1 + 91159 0.71 0.897584
Target:  5'- uUCGAGGgccAGGACAcggccgcGGCCCGcgccaacGCCGUCg -3'
miRNA:   3'- cAGCUCU---UCCUGU-------UUGGGU-------UGGCAGg -5'
5989 5' -51 NC_001806.1 + 57748 0.71 0.905399
Target:  5'- cGUCuGGAgcggcGGGACGGGCC--GCCGUCCc -3'
miRNA:   3'- -CAGcUCU-----UCCUGUUUGGguUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 13078 0.71 0.911028
Target:  5'- cUCGGGGaugaagcGGGGCAGcauCCCGauGCUGUCCa -3'
miRNA:   3'- cAGCUCU-------UCCUGUUu--GGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 21981 0.71 0.911641
Target:  5'- gGUCGAGcuGGACGccGACgCGACC-UCCg -3'
miRNA:   3'- -CAGCUCuuCCUGU--UUGgGUUGGcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.