miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 1700 0.7 0.934105
Target:  5'- cGUCGGugguccccGAGGcCGccGCCCGGCCGUCCa -3'
miRNA:   3'- -CAGCUc-------UUCCuGUu-UGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 4421 0.68 0.975826
Target:  5'- --aGAGggGGGguGGCCCGggcgggggcGgCGUCCg -3'
miRNA:   3'- cagCUCuuCCUguUUGGGU---------UgGCAGG- -5'
5989 5' -51 NC_001806.1 + 4583 0.68 0.975826
Target:  5'- -aCGAcGAGGACGagGACCCGGa-GUCCg -3'
miRNA:   3'- caGCUcUUCCUGU--UUGGGUUggCAGG- -5'
5989 5' -51 NC_001806.1 + 5495 0.67 0.98634
Target:  5'- -gCGGGAAGGAgGAGCagcggaGGCCG-CCg -3'
miRNA:   3'- caGCUCUUCCUgUUUGgg----UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 5876 0.68 0.978295
Target:  5'- -cCGGGAccaacGGGACGgcgggcGGCCCAaggGCCGcCCg -3'
miRNA:   3'- caGCUCU-----UCCUGU------UUGGGU---UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 7003 0.68 0.978295
Target:  5'- cUCGAGAuGaGcCAGACCCAACCc-CCg -3'
miRNA:   3'- cAGCUCUuC-CuGUUUGGGUUGGcaGG- -5'
5989 5' -51 NC_001806.1 + 11332 0.72 0.89218
Target:  5'- gGUCcacGggGGGCGucggaAGCCCAGCCGcCCc -3'
miRNA:   3'- -CAGcu-CuuCCUGU-----UUGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 13078 0.71 0.911028
Target:  5'- cUCGGGGaugaagcGGGGCAGcauCCCGauGCUGUCCa -3'
miRNA:   3'- cAGCUCU-------UCCUGUUu--GGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 15019 0.66 0.991871
Target:  5'- aGUCGGGucguGGGGCGAGuugCCAGCgGcCCg -3'
miRNA:   3'- -CAGCUCu---UCCUGUUUg--GGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 16482 0.7 0.939093
Target:  5'- gGUCGAGggGGGCuuGCC--GCCGcggCUg -3'
miRNA:   3'- -CAGCUCuuCCUGuuUGGguUGGCa--GG- -5'
5989 5' -51 NC_001806.1 + 18380 0.7 0.952571
Target:  5'- gGUgGAGAAGcGCAuuuuCCggCAGCCGUCCa -3'
miRNA:   3'- -CAgCUCUUCcUGUuu--GG--GUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 20003 0.7 0.948324
Target:  5'- -cCGAGccGGGGcgucGCGAugCCGacGCCGUCCg -3'
miRNA:   3'- caGCUC--UUCC----UGUUugGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 20563 0.69 0.970282
Target:  5'- -gCGGGGcGGGGCGcgGACCCAcCCGcCCu -3'
miRNA:   3'- caGCUCU-UCCUGU--UUGGGUuGGCaGG- -5'
5989 5' -51 NC_001806.1 + 20788 0.73 0.821445
Target:  5'- -aUGAGcccGAGGACGc-CCCGAUCGUCCa -3'
miRNA:   3'- caGCUC---UUCCUGUuuGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 20919 0.68 0.982667
Target:  5'- -gCGGGAGGGGgA---UCGGCCGUCCc -3'
miRNA:   3'- caGCUCUUCCUgUuugGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 21981 0.71 0.911641
Target:  5'- gGUCGAGcuGGACGccGACgCGACC-UCCg -3'
miRNA:   3'- -CAGCUCuuCCUGU--UUGgGUUGGcAGG- -5'
5989 5' -51 NC_001806.1 + 22723 0.71 0.923375
Target:  5'- -gCGGGggGcGACGAcCCCGacGCCGcCCg -3'
miRNA:   3'- caGCUCuuC-CUGUUuGGGU--UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 23279 0.7 0.94337
Target:  5'- -gCGGGAGGGgcgcaagcGCAAgagucccggcccgGCCCGGCCGcCCg -3'
miRNA:   3'- caGCUCUUCC--------UGUU-------------UGGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 24594 0.69 0.963539
Target:  5'- -gCGAGGAGGA--GGCCCAcucgcacGCCG-CCu -3'
miRNA:   3'- caGCUCUUCCUguUUGGGU-------UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 28763 0.74 0.78498
Target:  5'- gGUCGGGAuccaaAGGACGGACCCAgACCa-CCu -3'
miRNA:   3'- -CAGCUCU-----UCCUGUUUGGGU-UGGcaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.