miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 150493 0.69 0.970282
Target:  5'- -gCGGGAAGGGCG-GCCgGgGCCGcCCa -3'
miRNA:   3'- caGCUCUUCCUGUuUGGgU-UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 150090 0.69 0.958866
Target:  5'- --aGGGGAGG-CAGGCCCAccgcggggcggccCCGUCCc -3'
miRNA:   3'- cagCUCUUCCuGUUUGGGUu------------GGCAGG- -5'
5989 5' -51 NC_001806.1 + 148812 0.67 0.98634
Target:  5'- -gCGGGggGGGCuccCCCccgaGACCGcCCc -3'
miRNA:   3'- caGCUCuuCCUGuuuGGG----UUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 148094 0.7 0.948324
Target:  5'- -cCGAGggGGGCGcuguCCgAGCCGcggCCg -3'
miRNA:   3'- caGCUCuuCCUGUuu--GGgUUGGCa--GG- -5'
5989 5' -51 NC_001806.1 + 144813 0.67 0.984587
Target:  5'- -cCGGGAcgaGGGGCccccGACCgCGGCgGUCCg -3'
miRNA:   3'- caGCUCU---UCCUGu---UUGG-GUUGgCAGG- -5'
5989 5' -51 NC_001806.1 + 142202 0.69 0.967192
Target:  5'- cGUgGuGAGGGgcuucggcuGCAGGCCCGcuucAUCGUCCg -3'
miRNA:   3'- -CAgCuCUUCC---------UGUUUGGGU----UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 140537 0.75 0.756083
Target:  5'- -aCGGGGacggcGGGGCAGAgCCGcCCGUCCg -3'
miRNA:   3'- caGCUCU-----UCCUGUUUgGGUuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 136892 0.79 0.559771
Target:  5'- -cCGGGGcugGGGugAAccuuuACCCAGCCGUCCu -3'
miRNA:   3'- caGCUCU---UCCugUU-----UGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 134237 0.67 0.987937
Target:  5'- aGUCGgagcGGggGGGCGGcCCCGGCag-CCg -3'
miRNA:   3'- -CAGC----UCuuCCUGUUuGGGUUGgcaGG- -5'
5989 5' -51 NC_001806.1 + 133243 0.67 0.986172
Target:  5'- aUCGAGAcggccguGGGAgccgugcuUAGGgCCAacGCCGUCCg -3'
miRNA:   3'- cAGCUCU-------UCCU--------GUUUgGGU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 132559 0.76 0.705753
Target:  5'- -cCGGGggGGACccguCCCGuacuuuGCCGUCCu -3'
miRNA:   3'- caGCUCuuCCUGuuu-GGGU------UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 132058 0.67 0.990693
Target:  5'- aGUUGAGAgagcgucguGGGGCccGCCC-GCCGcCCc -3'
miRNA:   3'- -CAGCUCU---------UCCUGuuUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 126884 0.68 0.978295
Target:  5'- -cCGGGGcucucGGGGCcgcaGGACCCAGCaaggCGUCCa -3'
miRNA:   3'- caGCUCU-----UCCUG----UUUGGGUUG----GCAGG- -5'
5989 5' -51 NC_001806.1 + 119865 0.68 0.973157
Target:  5'- -gUGGGgcGGGCGAcgcGCCCGcccuccgcuGCUGUCCu -3'
miRNA:   3'- caGCUCuuCCUGUU---UGGGU---------UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 119208 0.68 0.975826
Target:  5'- -cCGcGAAGGAgGcugcGGCCCAcCUGUCCa -3'
miRNA:   3'- caGCuCUUCCUgU----UUGGGUuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 115075 0.75 0.726151
Target:  5'- -gCGGGAaaccgccuGGGGCcGGCCCAGCCcGUCCc -3'
miRNA:   3'- caGCUCU--------UCCUGuUUGGGUUGG-CAGG- -5'
5989 5' -51 NC_001806.1 + 114020 0.69 0.967192
Target:  5'- ----cGggGGGCGGACUgGACCGUgCa -3'
miRNA:   3'- cagcuCuuCCUGUUUGGgUUGGCAgG- -5'
5989 5' -51 NC_001806.1 + 113764 0.67 0.990693
Target:  5'- -gCGGGcAGGGCAAGCCgAGCUGa-- -3'
miRNA:   3'- caGCUCuUCCUGUUUGGgUUGGCagg -5'
5989 5' -51 NC_001806.1 + 113297 0.72 0.885208
Target:  5'- --gGGGggGGACGuuccCCCGGCCGgCCc -3'
miRNA:   3'- cagCUCuuCCUGUuu--GGGUUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 109042 0.69 0.960345
Target:  5'- uUgGAGggGGcuCAGGCCCAACgCGgccCCg -3'
miRNA:   3'- cAgCUCuuCCu-GUUUGGGUUG-GCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.