miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 30501 0.66 0.992928
Target:  5'- uGUCGAGcAGGAgGcGgCgGugCGUCCg -3'
miRNA:   3'- -CAGCUCuUCCUgUuUgGgUugGCAGG- -5'
5989 5' -51 NC_001806.1 + 36343 0.67 0.987937
Target:  5'- -cCGccGAGGACGcgccgGACCCAGagaCGUCCu -3'
miRNA:   3'- caGCucUUCCUGU-----UUGGGUUg--GCAGG- -5'
5989 5' -51 NC_001806.1 + 40242 0.66 0.993873
Target:  5'- -aCGGGGacuagcuguAGGA-GGACCCAGUCGUCCu -3'
miRNA:   3'- caGCUCU---------UCCUgUUUGGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 43725 0.69 0.970282
Target:  5'- gGUCGGGggGGAUugggguGACCgAGgCGcCCu -3'
miRNA:   3'- -CAGCUCuuCCUGu-----UUGGgUUgGCaGG- -5'
5989 5' -51 NC_001806.1 + 46962 0.69 0.962845
Target:  5'- cUCGGGAAcGGACGGgguucccgcuGCCCAcuuccccccauaagGuCCGUCCg -3'
miRNA:   3'- cAGCUCUU-CCUGUU----------UGGGU--------------U-GGCAGG- -5'
5989 5' -51 NC_001806.1 + 49291 0.72 0.89218
Target:  5'- -aCGGGAAGGcccGCGAGCCCGACgacggcgcgCGUCg -3'
miRNA:   3'- caGCUCUUCC---UGUUUGGGUUG---------GCAGg -5'
5989 5' -51 NC_001806.1 + 49557 0.83 0.338779
Target:  5'- -aCGAGGAGGACGAcuACCCGgaaGCCGUCg -3'
miRNA:   3'- caGCUCUUCCUGUU--UGGGU---UGGCAGg -5'
5989 5' -51 NC_001806.1 + 51130 0.67 0.98634
Target:  5'- uGUCGGGGAGGcGCGcGACCgGGCUGggaggCCc -3'
miRNA:   3'- -CAGCUCUUCC-UGU-UUGGgUUGGCa----GG- -5'
5989 5' -51 NC_001806.1 + 53781 0.72 0.885208
Target:  5'- cGUCGAcGAGccgcaGGCAGGCCCGaauGCCGUCUc -3'
miRNA:   3'- -CAGCUcUUC-----CUGUUUGGGU---UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 55391 0.73 0.846925
Target:  5'- aUUGGGggGGACGGACCCAuggaguaaCG-CCa -3'
miRNA:   3'- cAGCUCuuCCUGUUUGGGUug------GCaGG- -5'
5989 5' -51 NC_001806.1 + 56682 0.75 0.723111
Target:  5'- gGUCGGGggGGACGggGGCCCGggaACCccgggucgcucuggGUCCu -3'
miRNA:   3'- -CAGCUCuuCCUGU--UUGGGU---UGG--------------CAGG- -5'
5989 5' -51 NC_001806.1 + 57748 0.71 0.905399
Target:  5'- cGUCuGGAgcggcGGGACGGGCC--GCCGUCCc -3'
miRNA:   3'- -CAGcUCU-----UCCUGUUUGGguUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 58088 0.7 0.948324
Target:  5'- -cCGGcuGAAGGAgAccccuggcuauGACCCAGCCaGUCCa -3'
miRNA:   3'- caGCU--CUUCCUgU-----------UUGGGUUGG-CAGG- -5'
5989 5' -51 NC_001806.1 + 59024 0.7 0.943832
Target:  5'- ----cGAGGGACGcgUCCGACgCGUCCu -3'
miRNA:   3'- cagcuCUUCCUGUuuGGGUUG-GCAGG- -5'
5989 5' -51 NC_001806.1 + 59996 0.68 0.980573
Target:  5'- cUCGGGGacccggGGGACGgccggguccggAGCCgCGcuGCCGUCCg -3'
miRNA:   3'- cAGCUCU------UCCUGU-----------UUGG-GU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 64657 0.66 0.994713
Target:  5'- -gCGAGggGGGCu-GCCgAA-UGUCCu -3'
miRNA:   3'- caGCUCuuCCUGuuUGGgUUgGCAGG- -5'
5989 5' -51 NC_001806.1 + 65162 0.66 0.994713
Target:  5'- aGUCG-GAAucGGACGA--CCggUCGUCCg -3'
miRNA:   3'- -CAGCuCUU--CCUGUUugGGuuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 65638 0.67 0.990693
Target:  5'- -gCGAGAGGGGC---CCCGGCgG-CCu -3'
miRNA:   3'- caGCUCUUCCUGuuuGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 66816 0.67 0.990693
Target:  5'- -cCGAGcGGGGCcGGCCCGggugGCCGgugugcgCCg -3'
miRNA:   3'- caGCUCuUCCUGuUUGGGU----UGGCa------GG- -5'
5989 5' -51 NC_001806.1 + 67421 0.68 0.972317
Target:  5'- cGUCGuuGggGGuCAGcgcCCCAgggggcgcgucuguGCCGUCCa -3'
miRNA:   3'- -CAGCu-CuuCCuGUUu--GGGU--------------UGGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.