miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5989 5' -51 NC_001806.1 + 36343 0.67 0.987937
Target:  5'- -cCGccGAGGACGcgccgGACCCAGagaCGUCCu -3'
miRNA:   3'- caGCucUUCCUGU-----UUGGGUUg--GCAGG- -5'
5989 5' -51 NC_001806.1 + 94812 0.67 0.989384
Target:  5'- -gCGGGggGcGACGGGcagcCCCAcCCGUCg -3'
miRNA:   3'- caGCUCuuC-CUGUUU----GGGUuGGCAGg -5'
5989 5' -51 NC_001806.1 + 132058 0.67 0.990693
Target:  5'- aGUUGAGAgagcgucguGGGGCccGCCC-GCCGcCCc -3'
miRNA:   3'- -CAGCUCU---------UCCUGuuUGGGuUGGCaGG- -5'
5989 5' -51 NC_001806.1 + 66816 0.67 0.990693
Target:  5'- -cCGAGcGGGGCcGGCCCGggugGCCGgugugcgCCg -3'
miRNA:   3'- caGCUCuUCCUGuUUGGGU----UGGCa------GG- -5'
5989 5' -51 NC_001806.1 + 113764 0.67 0.990693
Target:  5'- -gCGGGcAGGGCAAGCCgAGCUGa-- -3'
miRNA:   3'- caGCUCuUCCUGUUUGGgUUGGCagg -5'
5989 5' -51 NC_001806.1 + 65638 0.67 0.990693
Target:  5'- -gCGAGAGGGGC---CCCGGCgG-CCu -3'
miRNA:   3'- caGCUCUUCCUGuuuGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 91274 0.67 0.989384
Target:  5'- -cCGAGguGGACGAcgccgGCCCGGCgGaCCc -3'
miRNA:   3'- caGCUCuuCCUGUU-----UGGGUUGgCaGG- -5'
5989 5' -51 NC_001806.1 + 77153 0.67 0.989384
Target:  5'- cUCGGGggGcGCGuGGCCCAACaCG-CCg -3'
miRNA:   3'- cAGCUCuuCcUGU-UUGGGUUG-GCaGG- -5'
5989 5' -51 NC_001806.1 + 67421 0.68 0.972317
Target:  5'- cGUCGuuGggGGuCAGcgcCCCAgggggcgcgucuguGCCGUCCa -3'
miRNA:   3'- -CAGCu-CuuCCuGUUu--GGGU--------------UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 119865 0.68 0.973157
Target:  5'- -gUGGGgcGGGCGAcgcGCCCGcccuccgcuGCUGUCCu -3'
miRNA:   3'- caGCUCuuCCUGUU---UGGGU---------UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 4421 0.68 0.975826
Target:  5'- --aGAGggGGGguGGCCCGggcgggggcGgCGUCCg -3'
miRNA:   3'- cagCUCuuCCUguUUGGGU---------UgGCAGG- -5'
5989 5' -51 NC_001806.1 + 4583 0.68 0.975826
Target:  5'- -aCGAcGAGGACGagGACCCGGa-GUCCg -3'
miRNA:   3'- caGCUcUUCCUGU--UUGGGUUggCAGG- -5'
5989 5' -51 NC_001806.1 + 119208 0.68 0.975826
Target:  5'- -cCGcGAAGGAgGcugcGGCCCAcCUGUCCa -3'
miRNA:   3'- caGCuCUUCCUgU----UUGGGUuGGCAGG- -5'
5989 5' -51 NC_001806.1 + 88411 0.68 0.977575
Target:  5'- uUUGAGAcgguaccagccgaaGGuGACGAACCCGggGuuGUCCa -3'
miRNA:   3'- cAGCUCU--------------UC-CUGUUUGGGU--UggCAGG- -5'
5989 5' -51 NC_001806.1 + 7003 0.68 0.978295
Target:  5'- cUCGAGAuGaGcCAGACCCAACCc-CCg -3'
miRNA:   3'- cAGCUCUuC-CuGUUUGGGUUGGcaGG- -5'
5989 5' -51 NC_001806.1 + 126884 0.68 0.978295
Target:  5'- -cCGGGGcucucGGGGCcgcaGGACCCAGCaaggCGUCCa -3'
miRNA:   3'- caGCUCU-----UCCUG----UUUGGGUUG----GCAGG- -5'
5989 5' -51 NC_001806.1 + 5876 0.68 0.978295
Target:  5'- -cCGGGAccaacGGGACGgcgggcGGCCCAaggGCCGcCCg -3'
miRNA:   3'- caGCUCU-----UCCUGU------UUGGGU---UGGCaGG- -5'
5989 5' -51 NC_001806.1 + 59996 0.68 0.980573
Target:  5'- cUCGGGGacccggGGGACGgccggguccggAGCCgCGcuGCCGUCCg -3'
miRNA:   3'- cAGCUCU------UCCUGU-----------UUGG-GU--UGGCAGG- -5'
5989 5' -51 NC_001806.1 + 20919 0.68 0.982667
Target:  5'- -gCGGGAGGGGgA---UCGGCCGUCCc -3'
miRNA:   3'- caGCUCUUCCUgUuugGGUUGGCAGG- -5'
5989 5' -51 NC_001806.1 + 43725 0.69 0.970282
Target:  5'- gGUCGGGggGGAUugggguGACCgAGgCGcCCu -3'
miRNA:   3'- -CAGCUCuuCCUGu-----UUGGgUUgGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.