miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 55720 0.67 0.776047
Target:  5'- cUCCGGGCUggCGGcuGACCCGggggacCCCGAu-- -3'
miRNA:   3'- -AGGCCCGGa-GUC--UUGGGU------GGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 117692 0.67 0.776047
Target:  5'- cUCgGGGCC-C-GAGCCCGCgucggcccccuCCGAGGCc -3'
miRNA:   3'- -AGgCCCGGaGuCUUGGGUG-----------GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 125953 0.67 0.776047
Target:  5'- gCgGGGCCUCAcGAccgcAUCCACCCuccgcuGggGCc -3'
miRNA:   3'- aGgCCCGGAGU-CU----UGGGUGGG------CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 1903 0.67 0.776047
Target:  5'- cCCGGGCCgaac-ACgCgGCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGagucuUG-GgUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 64966 0.67 0.776047
Target:  5'- cCCGGGCCggggguccCGGGGCaaaCAUCCaGggGCg -3'
miRNA:   3'- aGGCCCGGa-------GUCUUGg--GUGGG-CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 89342 0.68 0.770492
Target:  5'- -gCGGGCCgccgccacCGGAAaacaucgcgguuguuCCCACCCGAAc- -3'
miRNA:   3'- agGCCCGGa-------GUCUU---------------GGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 108049 0.68 0.766766
Target:  5'- gCCGGGCCgaCGGAGggCGCCCcAAGCg -3'
miRNA:   3'- aGGCCCGGa-GUCUUggGUGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 132991 0.68 0.757367
Target:  5'- gCCGcucCCUCAGAGCCCugGgCCGggGCc -3'
miRNA:   3'- aGGCcc-GGAGUCUUGGG--UgGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 16920 0.68 0.757367
Target:  5'- --gGGGCCaUgAGGAaaCACCCGGGACg -3'
miRNA:   3'- aggCCCGG-AgUCUUggGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 27049 0.68 0.757367
Target:  5'- aUCGGGCCgu---GCCUgggGCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGagucuUGGG---UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 32997 0.68 0.757367
Target:  5'- gCCGGGCCgccaCGGGGgCCGgCCGuuGGCg -3'
miRNA:   3'- aGGCCCGGa---GUCUUgGGUgGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 46218 0.68 0.757367
Target:  5'- cCCGcGGCCccggcggCGGAGaCCACCCGcgGCa -3'
miRNA:   3'- aGGC-CCGGa------GUCUUgGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 20472 0.68 0.747861
Target:  5'- gUCgGGGCC-CGGGcCCCGCCCccuGCc -3'
miRNA:   3'- -AGgCCCGGaGUCUuGGGUGGGcuuUG- -5'
5990 3' -57.6 NC_001806.1 + 135081 0.68 0.747861
Target:  5'- gCCGGGCCggaaaUCGGcGCCgACCgGGGAg -3'
miRNA:   3'- aGGCCCGG-----AGUCuUGGgUGGgCUUUg -5'
5990 3' -57.6 NC_001806.1 + 4156 0.68 0.747861
Target:  5'- cCCaGGCCgccguaCAGcACCCGCCCcgGggGCg -3'
miRNA:   3'- aGGcCCGGa-----GUCuUGGGUGGG--CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 7557 0.68 0.747861
Target:  5'- cUCGGGCCcgcgUCGGGAUCCACaCCGc--- -3'
miRNA:   3'- aGGCCCGG----AGUCUUGGGUG-GGCuuug -5'
5990 3' -57.6 NC_001806.1 + 49370 0.68 0.747861
Target:  5'- cCCGGGCC-C-GAugCgGCCCGuAGCc -3'
miRNA:   3'- aGGCCCGGaGuCUugGgUGGGCuUUG- -5'
5990 3' -57.6 NC_001806.1 + 67904 0.68 0.747861
Target:  5'- cCCGGGCCU--GggUCCGCgaacgggaugCCGGGACu -3'
miRNA:   3'- aGGCCCGGAguCuuGGGUG----------GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 20172 0.68 0.738254
Target:  5'- cCCGGGCCcgccccCGGGGCCgGCgCGGAGu -3'
miRNA:   3'- aGGCCCGGa-----GUCUUGGgUGgGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 3363 0.68 0.738254
Target:  5'- gCCGGGCCcCG--GCCagcCCCGGGACg -3'
miRNA:   3'- aGGCCCGGaGUcuUGGgu-GGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.