miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 118492 0.67 0.811827
Target:  5'- gUCCuGGCCUCGGAuUCC-CuaGAGACa -3'
miRNA:   3'- -AGGcCCGGAGUCUuGGGuGggCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 111296 0.67 0.811827
Target:  5'- aCCaGGGCCaUCuuGAAUgCACCCGucGCg -3'
miRNA:   3'- aGG-CCCGG-AGu-CUUGgGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22635 0.67 0.811827
Target:  5'- aCCGGGCgagcgcgCGGuGCCCGCCgGguACg -3'
miRNA:   3'- aGGCCCGga-----GUCuUGGGUGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 119594 0.67 0.811827
Target:  5'- -gCGGGUCU-GGAGCCC-CCCGGc-- -3'
miRNA:   3'- agGCCCGGAgUCUUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 4100 0.67 0.80661
Target:  5'- aCCGGcgucgcgccuccuccGCCUCGGGcGCCC-CCCaGAGGCc -3'
miRNA:   3'- aGGCC---------------CGGAGUCU-UGGGuGGG-CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 4200 0.67 0.803101
Target:  5'- gCCGGGCCaCGGcuCCCcgcugacguACCCGucGCg -3'
miRNA:   3'- aGGCCCGGaGUCuuGGG---------UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 44451 0.67 0.803101
Target:  5'- -gCGGGCC-CGGcgUCCGCgUGGAGCa -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUGgGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 22881 0.67 0.794223
Target:  5'- cCCGGGgCUggcCGGGGCCCgGCCCGccAGCc -3'
miRNA:   3'- aGGCCCgGA---GUCUUGGG-UGGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 30260 0.67 0.794223
Target:  5'- cUCCgGGGCC-CGGccCCCGcgccccggccCCCGggGCg -3'
miRNA:   3'- -AGG-CCCGGaGUCuuGGGU----------GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 81269 0.67 0.794223
Target:  5'- cCCGGGCCUCAcgGggUCCcggGCgUCGAAGg -3'
miRNA:   3'- aGGCCCGGAGU--CuuGGG---UG-GGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 92930 0.67 0.794223
Target:  5'- -gCGGGCCUggaggcCGGGGCCCGCgCGcugauGGACg -3'
miRNA:   3'- agGCCCGGA------GUCUUGGGUGgGC-----UUUG- -5'
5990 3' -57.6 NC_001806.1 + 95431 0.67 0.794223
Target:  5'- -gCGGGCC-CGGGggGCagggGCCCGAGACg -3'
miRNA:   3'- agGCCCGGaGUCU--UGgg--UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 114840 0.67 0.794223
Target:  5'- cCUGGGCCagcucCAGGugGCCCGgCaCGAAACu -3'
miRNA:   3'- aGGCCCGGa----GUCU--UGGGUgG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 135041 0.67 0.794223
Target:  5'- uUCCGGGCgaccgcgaUCuGGACCgGCCCcgcgGGGACg -3'
miRNA:   3'- -AGGCCCGg-------AGuCUUGGgUGGG----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 13014 0.67 0.794223
Target:  5'- aUgGGGCCUUGGgcccGugCCACCCGGc-- -3'
miRNA:   3'- aGgCCCGGAGUC----UugGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 13614 0.67 0.794223
Target:  5'- -aCGGGUC-CGGuagGCCCGCCUGGAu- -3'
miRNA:   3'- agGCCCGGaGUCu--UGGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 80831 0.67 0.785202
Target:  5'- gCCGaGGCCUCG--ACCCACUCccuggGGAACc -3'
miRNA:   3'- aGGC-CCGGAGUcuUGGGUGGG-----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 53257 0.67 0.785202
Target:  5'- cCCGGGCCgcacCGGGccCCCGCCCc---- -3'
miRNA:   3'- aGGCCCGGa---GUCUu-GGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 16014 0.67 0.785202
Target:  5'- --gGGGCUugaUCgGGAACCCugCaCGAAGCa -3'
miRNA:   3'- aggCCCGG---AG-UCUUGGGugG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 1903 0.67 0.776047
Target:  5'- cCCGGGCCgaac-ACgCgGCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGagucuUG-GgUGGGCUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.