miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 59989 0.66 0.844265
Target:  5'- cUCuGGCCUCgGGGACCCGggggacggccgggUCCGGAGCc -3'
miRNA:   3'- aGGcCCGGAG-UCUUGGGU-------------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 146194 0.66 0.840257
Target:  5'- cCCGGGCCgcggCucugugguuaacaccAGAGCCUGCCC--AACa -3'
miRNA:   3'- aGGCCCGGa---G---------------UCUUGGGUGGGcuUUG- -5'
5990 3' -57.6 NC_001806.1 + 21507 0.66 0.837018
Target:  5'- aCCGGGCC------CCgGCCCGggGCc -3'
miRNA:   3'- aGGCCCGGagucuuGGgUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 64259 0.66 0.837018
Target:  5'- uUCaGGGCCgauugCAGccCCCGCUCGAccAGCg -3'
miRNA:   3'- -AGgCCCGGa----GUCuuGGGUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 151015 0.66 0.837018
Target:  5'- gCCGaGGCC-CAGAccaccaggugGCgCACCCGGAc- -3'
miRNA:   3'- aGGC-CCGGaGUCU----------UGgGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 4742 0.66 0.837018
Target:  5'- cCCGGGCC--GGGGCCCggucGCCgGcgGCg -3'
miRNA:   3'- aGGCCCGGagUCUUGGG----UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 9523 0.66 0.837018
Target:  5'- gUCGGGUCUCuccgggGGGGCCaGCCaCGGGACc -3'
miRNA:   3'- aGGCCCGGAG------UCUUGGgUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 23429 0.66 0.837018
Target:  5'- cCCgGGGCC-C-GAGCCCGCCCc---- -3'
miRNA:   3'- aGG-CCCGGaGuCUUGGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 47560 0.66 0.837018
Target:  5'- cCCGcgacGGCCUCGGGcUCUACUaCGAAGCg -3'
miRNA:   3'- aGGC----CCGGAGUCUuGGGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 18972 0.66 0.828794
Target:  5'- cCCGGGC-----GACCCgcaggACCCGAAACa -3'
miRNA:   3'- aGGCCCGgagucUUGGG-----UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 68393 0.66 0.828794
Target:  5'- aCCGGGCC-CAcGGGCUU-CCgGAGACg -3'
miRNA:   3'- aGGCCCGGaGU-CUUGGGuGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 109237 0.66 0.828794
Target:  5'- gCCGGGCggggCGGAAUCCuggGCCCcGGGCa -3'
miRNA:   3'- aGGCCCGga--GUCUUGGG---UGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 50645 0.66 0.827961
Target:  5'- cCCGGGCgUgCGGGgacgcgcACCgGCgCCGGGACg -3'
miRNA:   3'- aGGCCCGgA-GUCU-------UGGgUG-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 66800 0.67 0.820394
Target:  5'- gCCGGgaggaucacgGCCgagCGGGGCCgGCCCGGGu- -3'
miRNA:   3'- aGGCC----------CGGa--GUCUUGGgUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 76347 0.67 0.820394
Target:  5'- gUCCGGGCaggggUCAcccuGCCCuGCCCGAGc- -3'
miRNA:   3'- -AGGCCCGg----AGUcu--UGGG-UGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 104450 0.67 0.820394
Target:  5'- gCCGGcaacaaaaaGCCaCGGAAgUCCGCCUGGAGCa -3'
miRNA:   3'- aGGCC---------CGGaGUCUU-GGGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 115322 0.67 0.820394
Target:  5'- cCCGGGCCuUCGcGGCCacggccaACCCGuGGGCg -3'
miRNA:   3'- aGGCCCGG-AGUcUUGGg------UGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 127044 0.67 0.820394
Target:  5'- -aUGGGCCUCucguucuccGGGGCCCgGCCCugcugcugccGAAACa -3'
miRNA:   3'- agGCCCGGAG---------UCUUGGG-UGGG----------CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 81926 0.67 0.819545
Target:  5'- gCCcGGCCUCGGc-CCCGuacgccuCCCGGGACc -3'
miRNA:   3'- aGGcCCGGAGUCuuGGGU-------GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 70126 0.67 0.815274
Target:  5'- aCUGGGCgcgcugaucacccucCUC-GAACcggCCGCCCGggGCg -3'
miRNA:   3'- aGGCCCG---------------GAGuCUUG---GGUGGGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.