Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5990 | 3' | -57.6 | NC_001806.1 | + | 64874 | 0.66 | 0.860572 |
Target: 5'- cCCGGGCCacggCGGGAUCgGCCgCaAGACc -3' miRNA: 3'- aGGCCCGGa---GUCUUGGgUGG-GcUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 130078 | 0.66 | 0.860572 |
Target: 5'- cUCCGGGgcgcgCUCGGAGCCCgucuuuacGCCCa---- -3' miRNA: 3'- -AGGCCCg----GAGUCUUGGG--------UGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 73217 | 0.66 | 0.860572 |
Target: 5'- cCCGGGCg-CAGAccucGCCCAgcugUUCGAGGCc -3' miRNA: 3'- aGGCCCGgaGUCU----UGGGU----GGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 68100 | 0.66 | 0.860572 |
Target: 5'- gCCGGGCgUCAuggcagaccgcGGucuCCCGUCCGAGGCc -3' miRNA: 3'- aGGCCCGgAGU-----------CUu--GGGUGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 6785 | 0.66 | 0.860572 |
Target: 5'- aCCGGGaggCggcCAGAACCgCcgugcacgACCCGGAGCg -3' miRNA: 3'- aGGCCCg--Ga--GUCUUGG-G--------UGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 116362 | 0.66 | 0.852914 |
Target: 5'- -gUGGGCCUC---ACCCACgCCGgcACc -3' miRNA: 3'- agGCCCGGAGucuUGGGUG-GGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 42852 | 0.66 | 0.852914 |
Target: 5'- -gCGGGCCUgGuGGGuCCCACCCa---- -3' miRNA: 3'- agGCCCGGAgU-CUU-GGGUGGGcuuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 131902 | 0.66 | 0.852137 |
Target: 5'- gCCGGccGCCUCcccgcuGGAGCCCcuggagaACCCGAc-- -3' miRNA: 3'- aGGCC--CGGAG------UCUUGGG-------UGGGCUuug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 22053 | 0.66 | 0.852914 |
Target: 5'- gCCGuGGCC-CGGcgccgGGCCCccgccCCCGggGCg -3' miRNA: 3'- aGGC-CCGGaGUC-----UUGGGu----GGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 34415 | 0.66 | 0.852914 |
Target: 5'- gCCGGGCCgggCcGGGCCgGgCCGGgugGGCg -3' miRNA: 3'- aGGCCCGGa--GuCUUGGgUgGGCU---UUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 49648 | 0.66 | 0.852914 |
Target: 5'- gCCGGGCC-CGGAGCuCCGggcggcauuCCCGuuGg -3' miRNA: 3'- aGGCCCGGaGUCUUG-GGU---------GGGCuuUg -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 100739 | 0.66 | 0.852914 |
Target: 5'- gCCGGGCgCcCAGGugC-GCCCGGAcaGCg -3' miRNA: 3'- aGGCCCG-GaGUCUugGgUGGGCUU--UG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 27141 | 0.66 | 0.852914 |
Target: 5'- cCUGGGUCUuccgCGGAGCUC-CCgGGAGCu -3' miRNA: 3'- aGGCCCGGA----GUCUUGGGuGGgCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 70126 | 0.67 | 0.815274 |
Target: 5'- aCUGGGCgcgcugaucacccucCUC-GAACcggCCGCCCGggGCg -3' miRNA: 3'- aGGCCCG---------------GAGuCUUG---GGUGGGCuuUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 81926 | 0.67 | 0.819545 |
Target: 5'- gCCcGGCCUCGGc-CCCGuacgccuCCCGGGACc -3' miRNA: 3'- aGGcCCGGAGUCuuGGGU-------GGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 66800 | 0.67 | 0.820394 |
Target: 5'- gCCGGgaggaucacgGCCgagCGGGGCCgGCCCGGGu- -3' miRNA: 3'- aGGCC----------CGGa--GUCUUGGgUGGGCUUug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 76347 | 0.67 | 0.820394 |
Target: 5'- gUCCGGGCaggggUCAcccuGCCCuGCCCGAGc- -3' miRNA: 3'- -AGGCCCGg----AGUcu--UGGG-UGGGCUUug -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 104450 | 0.67 | 0.820394 |
Target: 5'- gCCGGcaacaaaaaGCCaCGGAAgUCCGCCUGGAGCa -3' miRNA: 3'- aGGCC---------CGGaGUCUU-GGGUGGGCUUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 115322 | 0.67 | 0.820394 |
Target: 5'- cCCGGGCCuUCGcGGCCacggccaACCCGuGGGCg -3' miRNA: 3'- aGGCCCGG-AGUcUUGGg------UGGGC-UUUG- -5' |
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5990 | 3' | -57.6 | NC_001806.1 | + | 118492 | 0.67 | 0.811827 |
Target: 5'- gUCCuGGCCUCGGAuUCC-CuaGAGACa -3' miRNA: 3'- -AGGcCCGGAGUCUuGGGuGggCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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