miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 29548 0.71 0.578137
Target:  5'- --aGGGCCcugUCGcccACCCACCCGGAGCc -3'
miRNA:   3'- aggCCCGG---AGUcu-UGGGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 33053 0.71 0.588173
Target:  5'- cCCGGGCCg-GGAACCCGgaaaagccUCCGggGg -3'
miRNA:   3'- aGGCCCGGagUCUUGGGU--------GGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 125516 0.71 0.598239
Target:  5'- gCCGGcacuuucugacGCCUCAGGGCCUccgACCCcAGACa -3'
miRNA:   3'- aGGCC-----------CGGAGUCUUGGG---UGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 35691 0.71 0.598239
Target:  5'- gUCGGGCCUCccGACgUACgCCGAGGCu -3'
miRNA:   3'- aGGCCCGGAGucUUGgGUG-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 115859 0.71 0.598239
Target:  5'- gCCGGGCCcCAuaaAACCCAagCCGGGACu -3'
miRNA:   3'- aGGCCCGGaGUc--UUGGGUg-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 101482 0.71 0.598239
Target:  5'- gCCGGGCCgggacUGGAGCCCGCCguuuaCGggGu -3'
miRNA:   3'- aGGCCCGGa----GUCUUGGGUGG-----GCuuUg -5'
5990 3' -57.6 NC_001806.1 + 59618 0.7 0.60833
Target:  5'- gCCgGGGCCUUGGGGCCCcgGCCgGguACu -3'
miRNA:   3'- aGG-CCCGGAGUCUUGGG--UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 88991 0.7 0.618438
Target:  5'- gCCGcGGCC--AGAAgCCGCCCGAcccGACg -3'
miRNA:   3'- aGGC-CCGGagUCUUgGGUGGGCU---UUG- -5'
5990 3' -57.6 NC_001806.1 + 20131 0.7 0.628556
Target:  5'- gCCGGGCCUUuaugugcgccggAGAGaCCCGCCCc---- -3'
miRNA:   3'- aGGCCCGGAG------------UCUU-GGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 73078 0.7 0.628556
Target:  5'- uUCCGGagccuguccucGCCUCGGcACCC-CCCGAc-- -3'
miRNA:   3'- -AGGCC-----------CGGAGUCuUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 4465 0.7 0.638678
Target:  5'- gCCGGcGCCgcgcucgaCGGAcCCCGCCCGAc-- -3'
miRNA:   3'- aGGCC-CGGa-------GUCUuGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 73768 0.7 0.648794
Target:  5'- uUCUGGaGCgCUCGcaGGCCCACCCGGAc- -3'
miRNA:   3'- -AGGCC-CG-GAGUc-UUGGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 144978 0.7 0.648794
Target:  5'- cCCgGGGCCccggCGGAcccaagggGCCCcgGCCCGggGCc -3'
miRNA:   3'- aGG-CCCGGa---GUCU--------UGGG--UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 121511 0.7 0.648794
Target:  5'- aCCGGGaagCAGGGCCCGCCaucuGGGAUg -3'
miRNA:   3'- aGGCCCggaGUCUUGGGUGGg---CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 57646 0.7 0.648794
Target:  5'- aCgGGGUUUgGGGGCCCcCCCGGAAg -3'
miRNA:   3'- aGgCCCGGAgUCUUGGGuGGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 72372 0.7 0.648794
Target:  5'- gUCGGGCC-CGGAACCCGcggcuCCUGcGGACu -3'
miRNA:   3'- aGGCCCGGaGUCUUGGGU-----GGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 4434 0.69 0.658897
Target:  5'- cCCGGGCgggggCGGcgUCCGCCCGggGg -3'
miRNA:   3'- aGGCCCGga---GUCuuGGGUGGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 35650 0.69 0.658897
Target:  5'- aCCaGGCUUguGGcCCCACCCGAc-- -3'
miRNA:   3'- aGGcCCGGAguCUuGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 76835 0.69 0.658897
Target:  5'- cCCGGGCCUCcuacgcgacAGGGCgCgCGCCUGcAGGCg -3'
miRNA:   3'- aGGCCCGGAG---------UCUUG-G-GUGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 30195 0.69 0.658897
Target:  5'- gUCCGcGGCCgcgUCGGGACCCGCgCGc--- -3'
miRNA:   3'- -AGGC-CCGG---AGUCUUGGGUGgGCuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.