miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 26947 0.83 0.112239
Target:  5'- gUCUGGGCCUCGGccGCCCGCCUGgcGCg -3'
miRNA:   3'- -AGGCCCGGAGUCu-UGGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22119 0.8 0.195937
Target:  5'- cCCGGGCCUCuGGGGggCGCCCGAGGCg -3'
miRNA:   3'- aGGCCCGGAG-UCUUggGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 27080 0.77 0.267908
Target:  5'- cCCGGGCCcuggcccgCGGAGCCgGCCCGGcgAACu -3'
miRNA:   3'- aGGCCCGGa-------GUCUUGGgUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 97371 0.76 0.300815
Target:  5'- cCCGGGCCaCGGcGCcgaCCACCCGGAACc -3'
miRNA:   3'- aGGCCCGGaGUCuUG---GGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 63712 0.75 0.351984
Target:  5'- gCUGGGCCUCuucgccggcgAGGACCCccuucAUCCGGAGCa -3'
miRNA:   3'- aGGCCCGGAG----------UCUUGGG-----UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 144841 0.75 0.359779
Target:  5'- gUCCGGGCCccgUCcGGACCCGCUCGccGGCa -3'
miRNA:   3'- -AGGCCCGG---AGuCUUGGGUGGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 82022 0.74 0.392147
Target:  5'- gUCCGGcauCUUCGGGGCCCAUgaaCCGAAACg -3'
miRNA:   3'- -AGGCCc--GGAGUCUUGGGUG---GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 150897 0.74 0.408171
Target:  5'- -aCGGGCCUCGGGcCCCaggcacgGCCCGAuGACc -3'
miRNA:   3'- agGCCCGGAGUCUuGGG-------UGGGCU-UUG- -5'
5990 3' -57.6 NC_001806.1 + 83777 0.74 0.409026
Target:  5'- cCCGGGCCcucaUCGGAACCUuggccuCCgGggGCg -3'
miRNA:   3'- aGGCCCGG----AGUCUUGGGu-----GGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 23467 0.74 0.417633
Target:  5'- cCCGGGCCgccgCGGcgcaGGCCCGCCCGc--- -3'
miRNA:   3'- aGGCCCGGa---GUC----UUGGGUGGGCuuug -5'
5990 3' -57.6 NC_001806.1 + 5846 0.74 0.417633
Target:  5'- cCCGGGCCcccCGGu-CCCGCCCGccGGACg -3'
miRNA:   3'- aGGCCCGGa--GUCuuGGGUGGGC--UUUG- -5'
5990 3' -57.6 NC_001806.1 + 73964 0.73 0.435174
Target:  5'- gCCGGGCCccUCGGcguaauGCCCGCCCcggccGggGCg -3'
miRNA:   3'- aGGCCCGG--AGUCu-----UGGGUGGG-----CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 84907 0.73 0.435174
Target:  5'- gUCGGGCCUCccggaAGAGCCUgccgccucacGCCCGcAAACa -3'
miRNA:   3'- aGGCCCGGAG-----UCUUGGG----------UGGGC-UUUG- -5'
5990 3' -57.6 NC_001806.1 + 94551 0.73 0.462265
Target:  5'- gUCGGGCCUUAucguCCC-CCCGGAGCu -3'
miRNA:   3'- aGGCCCGGAGUcuu-GGGuGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 32942 0.73 0.462265
Target:  5'- gCCGGGCCguugUGGGGCCCcgGgCCGggGCc -3'
miRNA:   3'- aGGCCCGGa---GUCUUGGG--UgGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 94194 0.72 0.499707
Target:  5'- gCCGGGCCUgGaGGCCCAggCCGggGCc -3'
miRNA:   3'- aGGCCCGGAgUcUUGGGUg-GGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 139674 0.72 0.528648
Target:  5'- cCCGGGggaCUCAcuACCCACCgCGAGAUg -3'
miRNA:   3'- aGGCCCg--GAGUcuUGGGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 21145 0.71 0.548283
Target:  5'- cCCGGGCCccaccgaCGGGccgccGCCCACCCcGAGCc -3'
miRNA:   3'- aGGCCCGGa------GUCU-----UGGGUGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 151313 0.71 0.548283
Target:  5'- gCCGGGCCUCuGGcGCCgGCUCGGGc- -3'
miRNA:   3'- aGGCCCGGAG-UCuUGGgUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 52939 0.71 0.558186
Target:  5'- -aCGGGUgUgGGGACCCGcCCCGGAGg -3'
miRNA:   3'- agGCCCGgAgUCUUGGGU-GGGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.