miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 1903 0.67 0.776047
Target:  5'- cCCGGGCCgaac-ACgCgGCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGagucuUG-GgUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 2938 0.69 0.699016
Target:  5'- cUCCGGGCggCcGGGCCgGgCCGGGACu -3'
miRNA:   3'- -AGGCCCGgaGuCUUGGgUgGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 3363 0.68 0.738254
Target:  5'- gCCGGGCCcCG--GCCagcCCCGGGACg -3'
miRNA:   3'- aGGCCCGGaGUcuUGGgu-GGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 4100 0.67 0.80661
Target:  5'- aCCGGcgucgcgccuccuccGCCUCGGGcGCCC-CCCaGAGGCc -3'
miRNA:   3'- aGGCC---------------CGGAGUCU-UGGGuGGG-CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 4156 0.68 0.747861
Target:  5'- cCCaGGCCgccguaCAGcACCCGCCCcgGggGCg -3'
miRNA:   3'- aGGcCCGGa-----GUCuUGGGUGGG--CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 4200 0.67 0.803101
Target:  5'- gCCGGGCCaCGGcuCCCcgcugacguACCCGucGCg -3'
miRNA:   3'- aGGCCCGGaGUCuuGGG---------UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 4434 0.69 0.658897
Target:  5'- cCCGGGCgggggCGGcgUCCGCCCGggGg -3'
miRNA:   3'- aGGCCCGga---GUCuuGGGUGGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 4465 0.7 0.638678
Target:  5'- gCCGGcGCCgcgcucgaCGGAcCCCGCCCGAc-- -3'
miRNA:   3'- aGGCC-CGGa-------GUCUuGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 4742 0.66 0.837018
Target:  5'- cCCGGGCC--GGGGCCCggucGCCgGcgGCg -3'
miRNA:   3'- aGGCCCGGagUCUUGGG----UGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 5846 0.74 0.417633
Target:  5'- cCCGGGCCcccCGGu-CCCGCCCGccGGACg -3'
miRNA:   3'- aGGCCCGGa--GUCuuGGGUGGGC--UUUG- -5'
5990 3' -57.6 NC_001806.1 + 6785 0.66 0.860572
Target:  5'- aCCGGGaggCggcCAGAACCgCcgugcacgACCCGGAGCg -3'
miRNA:   3'- aGGCCCg--Ga--GUCUUGG-G--------UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 7557 0.68 0.747861
Target:  5'- cUCGGGCCcgcgUCGGGAUCCACaCCGc--- -3'
miRNA:   3'- aGGCCCGG----AGUCUUGGGUG-GGCuuug -5'
5990 3' -57.6 NC_001806.1 + 9523 0.66 0.837018
Target:  5'- gUCGGGUCUCuccgggGGGGCCaGCCaCGGGACc -3'
miRNA:   3'- aGGCCCGGAG------UCUUGGgUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 13014 0.67 0.794223
Target:  5'- aUgGGGCCUUGGgcccGugCCACCCGGc-- -3'
miRNA:   3'- aGgCCCGGAGUC----UugGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 13614 0.67 0.794223
Target:  5'- -aCGGGUC-CGGuagGCCCGCCUGGAu- -3'
miRNA:   3'- agGCCCGGaGUCu--UGGGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 16014 0.67 0.785202
Target:  5'- --gGGGCUugaUCgGGAACCCugCaCGAAGCa -3'
miRNA:   3'- aggCCCGG---AG-UCUUGGGugG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 16920 0.68 0.757367
Target:  5'- --gGGGCCaUgAGGAaaCACCCGGGACg -3'
miRNA:   3'- aggCCCGG-AgUCUUggGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 18972 0.66 0.828794
Target:  5'- cCCGGGC-----GACCCgcaggACCCGAAACa -3'
miRNA:   3'- aGGCCCGgagucUUGGG-----UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 20131 0.7 0.628556
Target:  5'- gCCGGGCCUUuaugugcgccggAGAGaCCCGCCCc---- -3'
miRNA:   3'- aGGCCCGGAG------------UCUU-GGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 20172 0.68 0.738254
Target:  5'- cCCGGGCCcgccccCGGGGCCgGCgCGGAGu -3'
miRNA:   3'- aGGCCCGGa-----GUCUUGGgUGgGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.