miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 151313 0.71 0.548283
Target:  5'- gCCGGGCCUCuGGcGCCgGCUCGGGc- -3'
miRNA:   3'- aGGCCCGGAG-UCuUGGgUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 151015 0.66 0.837018
Target:  5'- gCCGaGGCC-CAGAccaccaggugGCgCACCCGGAc- -3'
miRNA:   3'- aGGC-CCGGaGUCU----------UGgGUGGGCUUug -5'
5990 3' -57.6 NC_001806.1 + 150897 0.74 0.408171
Target:  5'- -aCGGGCCUCGGGcCCCaggcacgGCCCGAuGACc -3'
miRNA:   3'- agGCCCGGAGUCUuGGG-------UGGGCU-UUG- -5'
5990 3' -57.6 NC_001806.1 + 147083 0.68 0.717798
Target:  5'- uUCCGGGCacacuucCUCGGccCCCgcgGCCCaGAAGCa -3'
miRNA:   3'- -AGGCCCG-------GAGUCuuGGG---UGGG-CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 146194 0.66 0.840257
Target:  5'- cCCGGGCCgcggCucugugguuaacaccAGAGCCUGCCC--AACa -3'
miRNA:   3'- aGGCCCGGa---G---------------UCUUGGGUGGGcuUUG- -5'
5990 3' -57.6 NC_001806.1 + 144978 0.7 0.648794
Target:  5'- cCCgGGGCCccggCGGAcccaagggGCCCcgGCCCGggGCc -3'
miRNA:   3'- aGG-CCCGGa---GUCU--------UGGG--UGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 144841 0.75 0.359779
Target:  5'- gUCCGGGCCccgUCcGGACCCGCUCGccGGCa -3'
miRNA:   3'- -AGGCCCGG---AGuCUUGGGUGGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 139674 0.72 0.528648
Target:  5'- cCCGGGggaCUCAcuACCCACCgCGAGAUg -3'
miRNA:   3'- aGGCCCg--GAGUcuUGGGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 138678 0.69 0.668979
Target:  5'- cCCGGGCCU-GGAugCgACCCaGAGGa -3'
miRNA:   3'- aGGCCCGGAgUCUugGgUGGG-CUUUg -5'
5990 3' -57.6 NC_001806.1 + 136534 0.68 0.728558
Target:  5'- -aCGGGCCgcUCGGG--CCGCCCGgcGCa -3'
miRNA:   3'- agGCCCGG--AGUCUugGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 135081 0.68 0.747861
Target:  5'- gCCGGGCCggaaaUCGGcGCCgACCgGGGAg -3'
miRNA:   3'- aGGCCCGG-----AGUCuUGGgUGGgCUUUg -5'
5990 3' -57.6 NC_001806.1 + 135041 0.67 0.794223
Target:  5'- uUCCGGGCgaccgcgaUCuGGACCgGCCCcgcgGGGACg -3'
miRNA:   3'- -AGGCCCGg-------AGuCUUGGgUGGG----CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 134658 0.69 0.70893
Target:  5'- gUCCucguuGGCCgUCAGGACcgCCACCgCGAAGCc -3'
miRNA:   3'- -AGGc----CCGG-AGUCUUG--GGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 132991 0.68 0.757367
Target:  5'- gCCGcucCCUCAGAGCCCugGgCCGggGCc -3'
miRNA:   3'- aGGCcc-GGAGUCUUGGG--UgGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 131902 0.66 0.852137
Target:  5'- gCCGGccGCCUCcccgcuGGAGCCCcuggagaACCCGAc-- -3'
miRNA:   3'- aGGCC--CGGAG------UCUUGGG-------UGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 130078 0.66 0.860572
Target:  5'- cUCCGGGgcgcgCUCGGAGCCCgucuuuacGCCCa---- -3'
miRNA:   3'- -AGGCCCg----GAGUCUUGGG--------UGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 127044 0.67 0.820394
Target:  5'- -aUGGGCCUCucguucuccGGGGCCCgGCCCugcugcugccGAAACa -3'
miRNA:   3'- agGCCCGGAG---------UCUUGGG-UGGG----------CUUUG- -5'
5990 3' -57.6 NC_001806.1 + 126892 0.69 0.699016
Target:  5'- cUCgGGGCCgCAGGACCCAgCa-AGGCg -3'
miRNA:   3'- -AGgCCCGGaGUCUUGGGUgGgcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 125953 0.67 0.776047
Target:  5'- gCgGGGCCUCAcGAccgcAUCCACCCuccgcuGggGCc -3'
miRNA:   3'- aGgCCCGGAGU-CU----UGGGUGGG------CuuUG- -5'
5990 3' -57.6 NC_001806.1 + 125516 0.71 0.598239
Target:  5'- gCCGGcacuuucugacGCCUCAGGGCCUccgACCCcAGACa -3'
miRNA:   3'- aGGCC-----------CGGAGUCUUGGG---UGGGcUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.