miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 20472 0.68 0.747861
Target:  5'- gUCgGGGCC-CGGGcCCCGCCCccuGCc -3'
miRNA:   3'- -AGgCCCGGaGUCUuGGGUGGGcuuUG- -5'
5990 3' -57.6 NC_001806.1 + 21145 0.71 0.548283
Target:  5'- cCCGGGCCccaccgaCGGGccgccGCCCACCCcGAGCc -3'
miRNA:   3'- aGGCCCGGa------GUCU-----UGGGUGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 21507 0.66 0.837018
Target:  5'- aCCGGGCC------CCgGCCCGggGCc -3'
miRNA:   3'- aGGCCCGGagucuuGGgUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22053 0.66 0.852914
Target:  5'- gCCGuGGCC-CGGcgccgGGCCCccgccCCCGggGCg -3'
miRNA:   3'- aGGC-CCGGaGUC-----UUGGGu----GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22119 0.8 0.195937
Target:  5'- cCCGGGCCUCuGGGGggCGCCCGAGGCg -3'
miRNA:   3'- aGGCCCGGAG-UCUUggGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 22635 0.67 0.811827
Target:  5'- aCCGGGCgagcgcgCGGuGCCCGCCgGguACg -3'
miRNA:   3'- aGGCCCGga-----GUCuUGGGUGGgCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 22881 0.67 0.794223
Target:  5'- cCCGGGgCUggcCGGGGCCCgGCCCGccAGCc -3'
miRNA:   3'- aGGCCCgGA---GUCUUGGG-UGGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 23429 0.66 0.837018
Target:  5'- cCCgGGGCC-C-GAGCCCGCCCc---- -3'
miRNA:   3'- aGG-CCCGGaGuCUUGGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 23467 0.74 0.417633
Target:  5'- cCCGGGCCgccgCGGcgcaGGCCCGCCCGc--- -3'
miRNA:   3'- aGGCCCGGa---GUC----UUGGGUGGGCuuug -5'
5990 3' -57.6 NC_001806.1 + 26947 0.83 0.112239
Target:  5'- gUCUGGGCCUCGGccGCCCGCCUGgcGCg -3'
miRNA:   3'- -AGGCCCGGAGUCu-UGGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 27049 0.68 0.757367
Target:  5'- aUCGGGCCgu---GCCUgggGCCCGAGGCc -3'
miRNA:   3'- aGGCCCGGagucuUGGG---UGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 27080 0.77 0.267908
Target:  5'- cCCGGGCCcuggcccgCGGAGCCgGCCCGGcgAACu -3'
miRNA:   3'- aGGCCCGGa-------GUCUUGGgUGGGCU--UUG- -5'
5990 3' -57.6 NC_001806.1 + 27141 0.66 0.852914
Target:  5'- cCUGGGUCUuccgCGGAGCUC-CCgGGAGCu -3'
miRNA:   3'- aGGCCCGGA----GUCUUGGGuGGgCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 29548 0.71 0.578137
Target:  5'- --aGGGCCcugUCGcccACCCACCCGGAGCc -3'
miRNA:   3'- aggCCCGG---AGUcu-UGGGUGGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 30195 0.69 0.658897
Target:  5'- gUCCGcGGCCgcgUCGGGACCCGCgCGc--- -3'
miRNA:   3'- -AGGC-CCGG---AGUCUUGGGUGgGCuuug -5'
5990 3' -57.6 NC_001806.1 + 30260 0.67 0.794223
Target:  5'- cUCCgGGGCC-CGGccCCCGcgccccggccCCCGggGCg -3'
miRNA:   3'- -AGG-CCCGGaGUCuuGGGU----------GGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 30659 0.69 0.70893
Target:  5'- -gUGGGCC-CGGGACCCcCCUGAc-- -3'
miRNA:   3'- agGCCCGGaGUCUUGGGuGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 30858 0.69 0.679032
Target:  5'- uUCUGGGCCgCGGGGgCCgaggaaguguGCCCGGAAg -3'
miRNA:   3'- -AGGCCCGGaGUCUUgGG----------UGGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 31103 0.67 0.776047
Target:  5'- -gCGGGCCgCGGucCCCGgCUGGAGCc -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUgGGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 32645 0.66 0.851359
Target:  5'- -aCGGGCUggugugcuguaaCAcGAGCCCACCCGcgaguGGCg -3'
miRNA:   3'- agGCCCGGa-----------GU-CUUGGGUGGGCu----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.