miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5990 3' -57.6 NC_001806.1 + 32942 0.73 0.462265
Target:  5'- gCCGGGCCguugUGGGGCCCcgGgCCGggGCc -3'
miRNA:   3'- aGGCCCGGa---GUCUUGGG--UgGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 32997 0.68 0.757367
Target:  5'- gCCGGGCCgccaCGGGGgCCGgCCGuuGGCg -3'
miRNA:   3'- aGGCCCGGa---GUCUUgGGUgGGCu-UUG- -5'
5990 3' -57.6 NC_001806.1 + 33053 0.71 0.588173
Target:  5'- cCCGGGCCg-GGAACCCGgaaaagccUCCGggGg -3'
miRNA:   3'- aGGCCCGGagUCUUGGGU--------GGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 34415 0.66 0.852914
Target:  5'- gCCGGGCCgggCcGGGCCgGgCCGGgugGGCg -3'
miRNA:   3'- aGGCCCGGa--GuCUUGGgUgGGCU---UUG- -5'
5990 3' -57.6 NC_001806.1 + 34537 0.69 0.689047
Target:  5'- gCCGGGCCgcucguaAGAGCCgCgACCCGGc-- -3'
miRNA:   3'- aGGCCCGGag-----UCUUGG-G-UGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 35650 0.69 0.658897
Target:  5'- aCCaGGCUUguGGcCCCACCCGAc-- -3'
miRNA:   3'- aGGcCCGGAguCUuGGGUGGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 35691 0.71 0.598239
Target:  5'- gUCGGGCCUCccGACgUACgCCGAGGCu -3'
miRNA:   3'- aGGCCCGGAGucUUGgGUG-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 42852 0.66 0.852914
Target:  5'- -gCGGGCCUgGuGGGuCCCACCCa---- -3'
miRNA:   3'- agGCCCGGAgU-CUU-GGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 44451 0.67 0.803101
Target:  5'- -gCGGGCC-CGGcgUCCGCgUGGAGCa -3'
miRNA:   3'- agGCCCGGaGUCuuGGGUGgGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 45485 0.69 0.699016
Target:  5'- gCCGGGCacgcCuGAACCCGCCCu---- -3'
miRNA:   3'- aGGCCCGga--GuCUUGGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 46218 0.68 0.757367
Target:  5'- cCCGcGGCCccggcggCGGAGaCCACCCGcgGCa -3'
miRNA:   3'- aGGC-CCGGa------GUCUUgGGUGGGCuuUG- -5'
5990 3' -57.6 NC_001806.1 + 47560 0.66 0.837018
Target:  5'- cCCGcgacGGCCUCGGGcUCUACUaCGAAGCg -3'
miRNA:   3'- aGGC----CCGGAGUCUuGGGUGG-GCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 49370 0.68 0.747861
Target:  5'- cCCGGGCC-C-GAugCgGCCCGuAGCc -3'
miRNA:   3'- aGGCCCGGaGuCUugGgUGGGCuUUG- -5'
5990 3' -57.6 NC_001806.1 + 49648 0.66 0.852914
Target:  5'- gCCGGGCC-CGGAGCuCCGggcggcauuCCCGuuGg -3'
miRNA:   3'- aGGCCCGGaGUCUUG-GGU---------GGGCuuUg -5'
5990 3' -57.6 NC_001806.1 + 50645 0.66 0.827961
Target:  5'- cCCGGGCgUgCGGGgacgcgcACCgGCgCCGGGACg -3'
miRNA:   3'- aGGCCCGgA-GUCU-------UGGgUG-GGCUUUG- -5'
5990 3' -57.6 NC_001806.1 + 52939 0.71 0.558186
Target:  5'- -aCGGGUgUgGGGACCCGcCCCGGAGg -3'
miRNA:   3'- agGCCCGgAgUCUUGGGU-GGGCUUUg -5'
5990 3' -57.6 NC_001806.1 + 53257 0.67 0.785202
Target:  5'- cCCGGGCCgcacCGGGccCCCGCCCc---- -3'
miRNA:   3'- aGGCCCGGa---GUCUu-GGGUGGGcuuug -5'
5990 3' -57.6 NC_001806.1 + 55262 0.65 0.866553
Target:  5'- cCCGGGCCggcccccUCCGCCCaGAGCa -3'
miRNA:   3'- aGGCCCGGagucuu-GGGUGGGcUUUG- -5'
5990 3' -57.6 NC_001806.1 + 55720 0.67 0.776047
Target:  5'- cUCCGGGCUggCGGcuGACCCGggggacCCCGAu-- -3'
miRNA:   3'- -AGGCCCGGa-GUC--UUGGGU------GGGCUuug -5'
5990 3' -57.6 NC_001806.1 + 57039 0.69 0.689047
Target:  5'- gCCGGGCC-CGGGGCCgGggccCCCGGcuGCg -3'
miRNA:   3'- aGGCCCGGaGUCUUGGgU----GGGCUu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.