miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 67901 0.69 0.627483
Target:  5'- uCCCCCGGGCCuggGUCCGcgaaCGGGaugccGGGAc -3'
miRNA:   3'- -GGGGGUUUGGua-CAGGCc---GUCC-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 99559 0.69 0.617546
Target:  5'- gCCUCCGguuggGAUCcgGUggCGGCGGGGGGGa -3'
miRNA:   3'- -GGGGGU-----UUGGuaCAg-GCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 86335 0.69 0.617546
Target:  5'- gCCCCGAacGCCugcaGUCCcucgGGCAGGGGu- -3'
miRNA:   3'- gGGGGUU--UGGua--CAGG----CCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 149303 0.69 0.60762
Target:  5'- cCCCCCuaGAugCGUGUgaGuaAGGGGGGc -3'
miRNA:   3'- -GGGGG--UUugGUACAggCcgUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28714 0.69 0.60762
Target:  5'- aCCCCCGAcuCCGgugcGUCUGGaGGGcGGGAg -3'
miRNA:   3'- -GGGGGUUu-GGUa---CAGGCCgUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 147328 0.69 0.597711
Target:  5'- cCCCCCcGGCCcUGagUCGGaGGGGGGGu -3'
miRNA:   3'- -GGGGGuUUGGuACa-GGCCgUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148948 0.7 0.572076
Target:  5'- cCCCCCAcuucggucuCCGccucagagucgcugcUGUCCGGCAGGucucggucgcaGGGAa -3'
miRNA:   3'- -GGGGGUuu-------GGU---------------ACAGGCCGUCC-----------CCCU- -5'
5991 5' -59.4 NC_001806.1 + 30563 0.7 0.558377
Target:  5'- cCCCCCAGuCCAcgcGUcccccccucgcgCCGGCAGGGGc- -3'
miRNA:   3'- -GGGGGUUuGGUa--CA------------GGCCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 33342 0.7 0.54865
Target:  5'- gCCCCUuGGCCGcc-CCGGCugcAGGGGGGc -3'
miRNA:   3'- -GGGGGuUUGGUacaGGCCG---UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28816 0.7 0.529361
Target:  5'- cCCCCCucuuCCGaGgCCaGCAGGGGGGc -3'
miRNA:   3'- -GGGGGuuu-GGUaCaGGcCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 6074 0.7 0.529361
Target:  5'- gCCCCGggggcgGGCCcgGg-CGGCGGGGGGc -3'
miRNA:   3'- gGGGGU------UUGGuaCagGCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 148785 0.7 0.529361
Target:  5'- gCCCCCGcaacuGCCGggGUCUuccucGCGGGGGGGg -3'
miRNA:   3'- -GGGGGUu----UGGUa-CAGGc----CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 21264 0.71 0.500916
Target:  5'- aCCCCCAcGACCucgacgacGcCCGGCGGGacGGGAg -3'
miRNA:   3'- -GGGGGU-UUGGua------CaGGCCGUCC--CCCU- -5'
5991 5' -59.4 NC_001806.1 + 48372 0.71 0.491583
Target:  5'- cCCCCCcGACCgAUGUCa-GCcuGGGGGAc -3'
miRNA:   3'- -GGGGGuUUGG-UACAGgcCGu-CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 37783 0.71 0.482331
Target:  5'- gCUCCgGGGCCGgggcgcggggGUCCgcgGGCGGGGGGGc -3'
miRNA:   3'- -GGGGgUUUGGUa---------CAGG---CCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148108 0.71 0.473165
Target:  5'- -gUCCGAGCCGcGgCCGGCuGGGGGGc -3'
miRNA:   3'- ggGGGUUUGGUaCaGGCCGuCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 52565 0.72 0.464087
Target:  5'- uCCCCCGGACgaCAUGgccagCGGCccGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUG--GUACag---GCCG--UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 24338 0.72 0.437415
Target:  5'- gCCUCGGGCCgcGUGUUCGGCccGGGGGu -3'
miRNA:   3'- gGGGGUUUGG--UACAGGCCGu-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 76335 0.72 0.428722
Target:  5'- gCCgCCGAGCU-UGUCCgGGCAGGGGu- -3'
miRNA:   3'- -GGgGGUUUGGuACAGG-CCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 5923 0.72 0.428722
Target:  5'- gCCCCC---CCAUuggCCGGCGGGcGGGAc -3'
miRNA:   3'- -GGGGGuuuGGUAca-GGCCGUCC-CCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.