miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 23742 0.67 0.735325
Target:  5'- gCCgCCCAGGCCGcGUgCGGCGGcGGcGAc -3'
miRNA:   3'- -GG-GGGUUUGGUaCAgGCCGUC-CCcCU- -5'
5991 5' -59.4 NC_001806.1 + 20662 0.67 0.735325
Target:  5'- gCCCCCGG--CGUG-CCGGCgucGGGGcGGGg -3'
miRNA:   3'- -GGGGGUUugGUACaGGCCG---UCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 81761 0.67 0.732469
Target:  5'- gCCCCCAGGaCGaGUCCcgccgccaaaacgaGcGCGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUgGUaCAGG--------------C-CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28167 0.67 0.729606
Target:  5'- gCCCCCAgcgcgAggugaggggccgggcGCCAUGUCUGGgGcgccauauuGGGGGGc -3'
miRNA:   3'- -GGGGGU-----U---------------UGGUACAGGCCgU---------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28252 0.67 0.725778
Target:  5'- aCCCCCGAcCCuuacacUGgaaCCGGCcgccauguuGGGGGAc -3'
miRNA:   3'- -GGGGGUUuGGu-----ACa--GGCCGu--------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 46066 0.67 0.710347
Target:  5'- uCCCCCGGAcgcggcgucCCGuuuccggggcgguuuUGUCCGGCccGGGGc -3'
miRNA:   3'- -GGGGGUUU---------GGU---------------ACAGGCCGucCCCCu -5'
5991 5' -59.4 NC_001806.1 + 147365 0.67 0.706464
Target:  5'- gCCCUCuuGGCCccugCCGGCgcgAGGGGGGg -3'
miRNA:   3'- -GGGGGu-UUGGuacaGGCCG---UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 29429 0.67 0.70257
Target:  5'- aCCCCCAGACCcgcAUGgaggccgaggaggCCGuCAGGGcGGGc -3'
miRNA:   3'- -GGGGGUUUGG---UACa------------GGCcGUCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 31418 0.68 0.696713
Target:  5'- aCCagCCAAuCCGUGUCgGGgAGGGGa- -3'
miRNA:   3'- -GGg-GGUUuGGUACAGgCCgUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 21173 0.68 0.696713
Target:  5'- aCCCCGAGCCcagaCCGcgacgaGCGGGGGGc -3'
miRNA:   3'- gGGGGUUUGGuacaGGC------CGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 76043 0.68 0.696713
Target:  5'- gCCCCUGgcgcGGCUucUGcggCUGGCGGGGGGGc -3'
miRNA:   3'- -GGGGGU----UUGGu-ACa--GGCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 114849 0.68 0.686912
Target:  5'- gCUCCAGgugGCCcgGcacgaaaCUGGCGGGGGGGu -3'
miRNA:   3'- gGGGGUU---UGGuaCa------GGCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 19348 0.68 0.668178
Target:  5'- cCCCCCAAGCCuccgGggggcccuacggccaCCGauGCGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGua--Ca--------------GGC--CGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 2456 0.68 0.667189
Target:  5'- gCCCCCGgcGGCCccGUggGGguGGGGGu -3'
miRNA:   3'- -GGGGGU--UUGGuaCAggCCguCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 148173 0.68 0.657283
Target:  5'- gCCUCUgcguggggGGGCgCGgggcGUCCGGCGGGGGGc -3'
miRNA:   3'- -GGGGG--------UUUG-GUa---CAGGCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 109221 0.68 0.657283
Target:  5'- gCUCCCuuAgCGUGgggCCgGGCGGGGcGGAa -3'
miRNA:   3'- -GGGGGuuUgGUACa--GG-CCGUCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 149522 0.68 0.656291
Target:  5'- aCCCCCAacagggcGACCccgGUCCcuguauauauagGGuCAGGGGGu -3'
miRNA:   3'- -GGGGGU-------UUGGua-CAGG------------CC-GUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 41541 0.68 0.646366
Target:  5'- gUCCCGugggGACCAUGgauaUCCGGUAGacgggcaGGGGAg -3'
miRNA:   3'- gGGGGU----UUGGUAC----AGGCCGUC-------CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 41356 0.69 0.637423
Target:  5'- cCCCCCGGcauCCAgg-CCGcCAGGGGGc -3'
miRNA:   3'- -GGGGGUUu--GGUacaGGCcGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 74037 0.69 0.637423
Target:  5'- gCCCCgAGGCCGUucagGUUCGGCuGGaGGAg -3'
miRNA:   3'- -GGGGgUUUGGUA----CAGGCCGuCCcCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.