Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 30563 | 0.7 | 0.558377 |
Target: 5'- cCCCCCAGuCCAcgcGUcccccccucgcgCCGGCAGGGGc- -3' miRNA: 3'- -GGGGGUUuGGUa--CA------------GGCCGUCCCCcu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148948 | 0.7 | 0.572076 |
Target: 5'- cCCCCCAcuucggucuCCGccucagagucgcugcUGUCCGGCAGGucucggucgcaGGGAa -3' miRNA: 3'- -GGGGGUuu-------GGU---------------ACAGGCCGUCC-----------CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 147328 | 0.69 | 0.597711 |
Target: 5'- cCCCCCcGGCCcUGagUCGGaGGGGGGGu -3' miRNA: 3'- -GGGGGuUUGGuACa-GGCCgUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 28714 | 0.69 | 0.60762 |
Target: 5'- aCCCCCGAcuCCGgugcGUCUGGaGGGcGGGAg -3' miRNA: 3'- -GGGGGUUu-GGUa---CAGGCCgUCC-CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 149303 | 0.69 | 0.60762 |
Target: 5'- cCCCCCuaGAugCGUGUgaGuaAGGGGGGc -3' miRNA: 3'- -GGGGG--UUugGUACAggCcgUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 86335 | 0.69 | 0.617546 |
Target: 5'- gCCCCGAacGCCugcaGUCCcucgGGCAGGGGu- -3' miRNA: 3'- gGGGGUU--UGGua--CAGG----CCGUCCCCcu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 99559 | 0.69 | 0.617546 |
Target: 5'- gCCUCCGguuggGAUCcgGUggCGGCGGGGGGGa -3' miRNA: 3'- -GGGGGU-----UUGGuaCAg-GCCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 67901 | 0.69 | 0.627483 |
Target: 5'- uCCCCCGGGCCuggGUCCGcgaaCGGGaugccGGGAc -3' miRNA: 3'- -GGGGGUUUGGua-CAGGCc---GUCC-----CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 41356 | 0.69 | 0.637423 |
Target: 5'- cCCCCCGGcauCCAgg-CCGcCAGGGGGc -3' miRNA: 3'- -GGGGGUUu--GGUacaGGCcGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 74037 | 0.69 | 0.637423 |
Target: 5'- gCCCCgAGGCCGUucagGUUCGGCuGGaGGAg -3' miRNA: 3'- -GGGGgUUUGGUA----CAGGCCGuCCcCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 41541 | 0.68 | 0.646366 |
Target: 5'- gUCCCGugggGACCAUGgauaUCCGGUAGacgggcaGGGGAg -3' miRNA: 3'- gGGGGU----UUGGUAC----AGGCCGUC-------CCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 149522 | 0.68 | 0.656291 |
Target: 5'- aCCCCCAacagggcGACCccgGUCCcuguauauauagGGuCAGGGGGu -3' miRNA: 3'- -GGGGGU-------UUGGua-CAGG------------CC-GUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148173 | 0.68 | 0.657283 |
Target: 5'- gCCUCUgcguggggGGGCgCGgggcGUCCGGCGGGGGGc -3' miRNA: 3'- -GGGGG--------UUUG-GUa---CAGGCCGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 109221 | 0.68 | 0.657283 |
Target: 5'- gCUCCCuuAgCGUGgggCCgGGCGGGGcGGAa -3' miRNA: 3'- -GGGGGuuUgGUACa--GG-CCGUCCC-CCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 2456 | 0.68 | 0.667189 |
Target: 5'- gCCCCCGgcGGCCccGUggGGguGGGGGu -3' miRNA: 3'- -GGGGGU--UUGGuaCAggCCguCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 19348 | 0.68 | 0.668178 |
Target: 5'- cCCCCCAAGCCuccgGggggcccuacggccaCCGauGCGGGGGGc -3' miRNA: 3'- -GGGGGUUUGGua--Ca--------------GGC--CGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 114849 | 0.68 | 0.686912 |
Target: 5'- gCUCCAGgugGCCcgGcacgaaaCUGGCGGGGGGGu -3' miRNA: 3'- gGGGGUU---UGGuaCa------GGCCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 21173 | 0.68 | 0.696713 |
Target: 5'- aCCCCGAGCCcagaCCGcgacgaGCGGGGGGc -3' miRNA: 3'- gGGGGUUUGGuacaGGC------CGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 31418 | 0.68 | 0.696713 |
Target: 5'- aCCagCCAAuCCGUGUCgGGgAGGGGa- -3' miRNA: 3'- -GGg-GGUUuGGUACAGgCCgUCCCCcu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 76043 | 0.68 | 0.696713 |
Target: 5'- gCCCCUGgcgcGGCUucUGcggCUGGCGGGGGGGc -3' miRNA: 3'- -GGGGGU----UUGGu-ACa--GGCCGUCCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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