miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 143228 0.77 0.236569
Target:  5'- aCCCCCAAcCCGUG-CUGGUggugcggguuggGGGGGGAu -3'
miRNA:   3'- -GGGGGUUuGGUACaGGCCG------------UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 1459 0.76 0.268265
Target:  5'- gCCCCCGGGCCGUcGUcgucgccgcgcagcaCCaGCGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGUA-CA---------------GGcCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 92885 0.75 0.290586
Target:  5'- cCCCCCAGcgugcaggcugcgGCCGcgugGUCCGcGCAGGGcGGGg -3'
miRNA:   3'- -GGGGGUU-------------UGGUa---CAGGC-CGUCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 49432 0.75 0.31155
Target:  5'- uCCCCgCGGuccuCCGcagGcCCGGCAGGGGGGa -3'
miRNA:   3'- -GGGG-GUUu---GGUa--CaGGCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 113366 0.74 0.347741
Target:  5'- gCCCCUGGcGCUAUGUCCGGCGGcguuccGGGAc -3'
miRNA:   3'- -GGGGGUU-UGGUACAGGCCGUCc-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 151258 0.74 0.363035
Target:  5'- cCCCCCGGGCCcacgCCgGGCGGuGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGuacaGG-CCGUC-CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 20368 0.74 0.363035
Target:  5'- gCCCgCCGucCCGUuggucccggcGUCCGGCGGGcGGGAc -3'
miRNA:   3'- -GGG-GGUuuGGUA----------CAGGCCGUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 45150 0.73 0.37879
Target:  5'- aCCCCCGAcCCAagcUGUCCGGCuGGacaaGGAu -3'
miRNA:   3'- -GGGGGUUuGGU---ACAGGCCGuCCc---CCU- -5'
5991 5' -59.4 NC_001806.1 + 5923 0.72 0.428722
Target:  5'- gCCCCC---CCAUuggCCGGCGGGcGGGAc -3'
miRNA:   3'- -GGGGGuuuGGUAca-GGCCGUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 76335 0.72 0.428722
Target:  5'- gCCgCCGAGCU-UGUCCgGGCAGGGGu- -3'
miRNA:   3'- -GGgGGUUUGGuACAGG-CCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 24338 0.72 0.437415
Target:  5'- gCCUCGGGCCgcGUGUUCGGCccGGGGGu -3'
miRNA:   3'- gGGGGUUUGG--UACAGGCCGu-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 52565 0.72 0.464087
Target:  5'- uCCCCCGGACgaCAUGgccagCGGCccGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUG--GUACag---GCCG--UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148108 0.71 0.473165
Target:  5'- -gUCCGAGCCGcGgCCGGCuGGGGGGc -3'
miRNA:   3'- ggGGGUUUGGUaCaGGCCGuCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 37783 0.71 0.482331
Target:  5'- gCUCCgGGGCCGgggcgcggggGUCCgcgGGCGGGGGGGc -3'
miRNA:   3'- -GGGGgUUUGGUa---------CAGG---CCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 48372 0.71 0.491583
Target:  5'- cCCCCCcGACCgAUGUCa-GCcuGGGGGAc -3'
miRNA:   3'- -GGGGGuUUGG-UACAGgcCGu-CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 21264 0.71 0.500916
Target:  5'- aCCCCCAcGACCucgacgacGcCCGGCGGGacGGGAg -3'
miRNA:   3'- -GGGGGU-UUGGua------CaGGCCGUCC--CCCU- -5'
5991 5' -59.4 NC_001806.1 + 28816 0.7 0.529361
Target:  5'- cCCCCCucuuCCGaGgCCaGCAGGGGGGc -3'
miRNA:   3'- -GGGGGuuu-GGUaCaGGcCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148785 0.7 0.529361
Target:  5'- gCCCCCGcaacuGCCGggGUCUuccucGCGGGGGGGg -3'
miRNA:   3'- -GGGGGUu----UGGUa-CAGGc----CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 6074 0.7 0.529361
Target:  5'- gCCCCGggggcgGGCCcgGg-CGGCGGGGGGc -3'
miRNA:   3'- gGGGGU------UUGGuaCagGCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 33342 0.7 0.54865
Target:  5'- gCCCCUuGGCCGcc-CCGGCugcAGGGGGGc -3'
miRNA:   3'- -GGGGGuUUGGUacaGGCCG---UCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.