miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 1459 0.76 0.268265
Target:  5'- gCCCCCGGGCCGUcGUcgucgccgcgcagcaCCaGCGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGUA-CA---------------GGcCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 2456 0.68 0.667189
Target:  5'- gCCCCCGgcGGCCccGUggGGguGGGGGu -3'
miRNA:   3'- -GGGGGU--UUGGuaCAggCCguCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 5923 0.72 0.428722
Target:  5'- gCCCCC---CCAUuggCCGGCGGGcGGGAc -3'
miRNA:   3'- -GGGGGuuuGGUAca-GGCCGUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 6074 0.7 0.529361
Target:  5'- gCCCCGggggcgGGCCcgGg-CGGCGGGGGGc -3'
miRNA:   3'- gGGGGU------UUGGuaCagGCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 16057 0.66 0.763425
Target:  5'- uCCCCCAGGCaaAUGUCCu-CGGGGGu- -3'
miRNA:   3'- -GGGGGUUUGg-UACAGGccGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 19348 0.68 0.668178
Target:  5'- cCCCCCAAGCCuccgGggggcccuacggccaCCGauGCGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGua--Ca--------------GGC--CGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 20368 0.74 0.363035
Target:  5'- gCCCgCCGucCCGUuggucccggcGUCCGGCGGGcGGGAc -3'
miRNA:   3'- -GGG-GGUuuGGUA----------CAGGCCGUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 20662 0.67 0.735325
Target:  5'- gCCCCCGG--CGUG-CCGGCgucGGGGcGGGg -3'
miRNA:   3'- -GGGGGUUugGUACaGGCCG---UCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 21173 0.68 0.696713
Target:  5'- aCCCCGAGCCcagaCCGcgacgaGCGGGGGGc -3'
miRNA:   3'- gGGGGUUUGGuacaGGC------CGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 21264 0.71 0.500916
Target:  5'- aCCCCCAcGACCucgacgacGcCCGGCGGGacGGGAg -3'
miRNA:   3'- -GGGGGU-UUGGua------CaGGCCGUCC--CCCU- -5'
5991 5' -59.4 NC_001806.1 + 23742 0.67 0.735325
Target:  5'- gCCgCCCAGGCCGcGUgCGGCGGcGGcGAc -3'
miRNA:   3'- -GG-GGGUUUGGUaCAgGCCGUC-CCcCU- -5'
5991 5' -59.4 NC_001806.1 + 24338 0.72 0.437415
Target:  5'- gCCUCGGGCCgcGUGUUCGGCccGGGGGu -3'
miRNA:   3'- gGGGGUUUGG--UACAGGCCGu-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 26689 0.67 0.754157
Target:  5'- gCCCCCAccGCCcggcGUGggcCCGGgGGGcGGGGc -3'
miRNA:   3'- -GGGGGUu-UGG----UACa--GGCCgUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 28167 0.67 0.729606
Target:  5'- gCCCCCAgcgcgAggugaggggccgggcGCCAUGUCUGGgGcgccauauuGGGGGGc -3'
miRNA:   3'- -GGGGGU-----U---------------UGGUACAGGCCgU---------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28252 0.67 0.725778
Target:  5'- aCCCCCGAcCCuuacacUGgaaCCGGCcgccauguuGGGGGAc -3'
miRNA:   3'- -GGGGGUUuGGu-----ACa--GGCCGu--------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 28714 0.69 0.60762
Target:  5'- aCCCCCGAcuCCGgugcGUCUGGaGGGcGGGAg -3'
miRNA:   3'- -GGGGGUUu-GGUa---CAGGCCgUCC-CCCU- -5'
5991 5' -59.4 NC_001806.1 + 28816 0.7 0.529361
Target:  5'- cCCCCCucuuCCGaGgCCaGCAGGGGGGc -3'
miRNA:   3'- -GGGGGuuu-GGUaCaGGcCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 29429 0.67 0.70257
Target:  5'- aCCCCCAGACCcgcAUGgaggccgaggaggCCGuCAGGGcGGGc -3'
miRNA:   3'- -GGGGGUUUGG---UACa------------GGCcGUCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 30563 0.7 0.558377
Target:  5'- cCCCCCAGuCCAcgcGUcccccccucgcgCCGGCAGGGGc- -3'
miRNA:   3'- -GGGGGUUuGGUa--CA------------GGCCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 31418 0.68 0.696713
Target:  5'- aCCagCCAAuCCGUGUCgGGgAGGGGa- -3'
miRNA:   3'- -GGg-GGUUuGGUACAGgCCgUCCCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.