miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 32990 0.66 0.763425
Target:  5'- gCCCCGGGCCGgg-CCGcCAcGGGGGc -3'
miRNA:   3'- gGGGGUUUGGUacaGGCcGU-CCCCCu -5'
5991 5' -59.4 NC_001806.1 + 33051 0.67 0.744788
Target:  5'- gCCCCGGGCCGggaacCCGGaaaagccucCGGGGGGc -3'
miRNA:   3'- gGGGGUUUGGUaca--GGCC---------GUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 33342 0.7 0.54865
Target:  5'- gCCCCUuGGCCGcc-CCGGCugcAGGGGGGc -3'
miRNA:   3'- -GGGGGuUUGGUacaGGCCG---UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 35371 0.66 0.781623
Target:  5'- cCCCCCuacgauAGCU-UGUCUGGUAGGaacgaGGGGc -3'
miRNA:   3'- -GGGGGu-----UUGGuACAGGCCGUCC-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 37783 0.71 0.482331
Target:  5'- gCUCCgGGGCCGgggcgcggggGUCCgcgGGCGGGGGGGc -3'
miRNA:   3'- -GGGGgUUUGGUa---------CAGG---CCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 41356 0.69 0.637423
Target:  5'- cCCCCCGGcauCCAgg-CCGcCAGGGGGc -3'
miRNA:   3'- -GGGGGUUu--GGUacaGGCcGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 41541 0.68 0.646366
Target:  5'- gUCCCGugggGACCAUGgauaUCCGGUAGacgggcaGGGGAg -3'
miRNA:   3'- gGGGGU----UUGGUAC----AGGCCGUC-------CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 45150 0.73 0.37879
Target:  5'- aCCCCCGAcCCAagcUGUCCGGCuGGacaaGGAu -3'
miRNA:   3'- -GGGGGUUuGGU---ACAGGCCGuCCc---CCU- -5'
5991 5' -59.4 NC_001806.1 + 46066 0.67 0.710347
Target:  5'- uCCCCCGGAcgcggcgucCCGuuuccggggcgguuuUGUCCGGCccGGGGc -3'
miRNA:   3'- -GGGGGUUU---------GGU---------------ACAGGCCGucCCCCu -5'
5991 5' -59.4 NC_001806.1 + 48372 0.71 0.491583
Target:  5'- cCCCCCcGACCgAUGUCa-GCcuGGGGGAc -3'
miRNA:   3'- -GGGGGuUUGG-UACAGgcCGu-CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 49432 0.75 0.31155
Target:  5'- uCCCCgCGGuccuCCGcagGcCCGGCAGGGGGGa -3'
miRNA:   3'- -GGGG-GUUu---GGUa--CaGGCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 50090 0.66 0.781623
Target:  5'- gUCCCGucggggccgcGGCCGUG-CCGuuacugagcGCGGGGGGGu -3'
miRNA:   3'- gGGGGU----------UUGGUACaGGC---------CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 52565 0.72 0.464087
Target:  5'- uCCCCCGGACgaCAUGgccagCGGCccGGGGGGGc -3'
miRNA:   3'- -GGGGGUUUG--GUACag---GCCG--UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 66338 0.66 0.799315
Target:  5'- gCCCCAAagcGCUcgGUgCggugcaGGCAGcGGGGAc -3'
miRNA:   3'- gGGGGUU---UGGuaCAgG------CCGUC-CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 66636 0.67 0.754157
Target:  5'- gCUCCAgGGCCGgcuccaacCCGcGCGGGGGGAg -3'
miRNA:   3'- gGGGGU-UUGGUaca-----GGC-CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 67520 0.66 0.771673
Target:  5'- gCCCUggGCC--GUCgCGGCGagagaucGGGGGGc -3'
miRNA:   3'- gGGGGuuUGGuaCAG-GCCGU-------CCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 67901 0.69 0.627483
Target:  5'- uCCCCCGGGCCuggGUCCGcgaaCGGGaugccGGGAc -3'
miRNA:   3'- -GGGGGUUUGGua-CAGGCc---GUCC-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 71499 0.65 0.805376
Target:  5'- aCCCCCGuguguuguucuCgGUGUuauggugugcgggCgGGCGGGGGGGg -3'
miRNA:   3'- -GGGGGUuu---------GgUACA-------------GgCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 73988 0.66 0.781623
Target:  5'- gCCCC-GGCCGgggcgGcCCcGCAGGGGGc -3'
miRNA:   3'- gGGGGuUUGGUa----CaGGcCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 74037 0.69 0.637423
Target:  5'- gCCCCgAGGCCGUucagGUUCGGCuGGaGGAg -3'
miRNA:   3'- -GGGGgUUUGGUA----CAGGCCGuCCcCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.