Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 20662 | 0.67 | 0.735325 |
Target: 5'- gCCCCCGG--CGUG-CCGGCgucGGGGcGGGg -3' miRNA: 3'- -GGGGGUUugGUACaGGCCG---UCCC-CCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 119954 | 0.67 | 0.743845 |
Target: 5'- gCCCCC--ACCAgcUGUCUcccgcugGGCAGGcGGAg -3' miRNA: 3'- -GGGGGuuUGGU--ACAGG-------CCGUCCcCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 35371 | 0.66 | 0.781623 |
Target: 5'- cCCCCCuacgauAGCU-UGUCUGGUAGGaacgaGGGGc -3' miRNA: 3'- -GGGGGu-----UUGGuACAGGCCGUCC-----CCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 73988 | 0.66 | 0.781623 |
Target: 5'- gCCCC-GGCCGgggcgGcCCcGCAGGGGGc -3' miRNA: 3'- gGGGGuUUGGUa----CaGGcCGUCCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 95338 | 0.66 | 0.781623 |
Target: 5'- gCCCCGacgacgacgggGACCGUGUCgCcguagaggaaggGGCAcGGGGGu -3' miRNA: 3'- gGGGGU-----------UUGGUACAG-G------------CCGU-CCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 50090 | 0.66 | 0.781623 |
Target: 5'- gUCCCGucggggccgcGGCCGUG-CCGuuacugagcGCGGGGGGGu -3' miRNA: 3'- gGGGGU----------UUGGUACaGGC---------CGUCCCCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 66338 | 0.66 | 0.799315 |
Target: 5'- gCCCCAAagcGCUcgGUgCggugcaGGCAGcGGGGAc -3' miRNA: 3'- gGGGGUU---UGGuaCAgG------CCGUC-CCCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 104902 | 0.66 | 0.799315 |
Target: 5'- cCCCCCAGGCCGUG-CUGGCGu----- -3' miRNA: 3'- -GGGGGUUUGGUACaGGCCGUcccccu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 151318 | 0.66 | 0.799315 |
Target: 5'- gCCUCUGGcGCCGgcUCgGGCGGGGGGc -3' miRNA: 3'- -GGGGGUU-UGGUacAGgCCGUCCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 87434 | 0.66 | 0.799315 |
Target: 5'- gCCCCUAAAUCgccccuggGUGUCCGGCAGa---- -3' miRNA: 3'- -GGGGGUUUGG--------UACAGGCCGUCccccu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 136386 | 0.66 | 0.781623 |
Target: 5'- gCCUCCGcGACCGUGgccagCUGGCGGGucagcGGGu -3' miRNA: 3'- -GGGGGU-UUGGUACa----GGCCGUCC-----CCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 96323 | 0.66 | 0.772583 |
Target: 5'- gCCCCCAGGCUAc--CUGaCGGGGGGc -3' miRNA: 3'- -GGGGGUUUGGUacaGGCcGUCCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 33051 | 0.67 | 0.744788 |
Target: 5'- gCCCCGGGCCGggaacCCGGaaaagccucCGGGGGGc -3' miRNA: 3'- gGGGGUUUGGUaca--GGCC---------GUCCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 66636 | 0.67 | 0.754157 |
Target: 5'- gCUCCAgGGCCGgcuccaacCCGcGCGGGGGGAg -3' miRNA: 3'- gGGGGU-UUGGUaca-----GGC-CGUCCCCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 26689 | 0.67 | 0.754157 |
Target: 5'- gCCCCCAccGCCcggcGUGggcCCGGgGGGcGGGGc -3' miRNA: 3'- -GGGGGUu-UGG----UACa--GGCCgUCC-CCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 85733 | 0.67 | 0.754157 |
Target: 5'- gCCCCGAACCcugcgGUCCGGagccgcgcggcCAcgucguccGGGGGGu -3' miRNA: 3'- gGGGGUUUGGua---CAGGCC-----------GU--------CCCCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 16057 | 0.66 | 0.763425 |
Target: 5'- uCCCCCAGGCaaAUGUCCu-CGGGGGu- -3' miRNA: 3'- -GGGGGUUUGg-UACAGGccGUCCCCcu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 32990 | 0.66 | 0.763425 |
Target: 5'- gCCCCGGGCCGgg-CCGcCAcGGGGGc -3' miRNA: 3'- gGGGGUUUGGUacaGGCcGU-CCCCCu -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 67520 | 0.66 | 0.771673 |
Target: 5'- gCCCUggGCC--GUCgCGGCGagagaucGGGGGGc -3' miRNA: 3'- gGGGGuuUGGuaCAG-GCCGU-------CCCCCU- -5' |
|||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 101277 | 0.66 | 0.771673 |
Target: 5'- aCCCagCCAcguaaaugggcacGGCCcUGUCgGGCAGGGGc- -3' miRNA: 3'- -GGG--GGU-------------UUGGuACAGgCCGUCCCCcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home