Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5991 | 5' | -59.4 | NC_001806.1 | + | 81761 | 0.67 | 0.732469 |
Target: 5'- gCCCCCAGGaCGaGUCCcgccgccaaaacgaGcGCGGGGGGGc -3' miRNA: 3'- -GGGGGUUUgGUaCAGG--------------C-CGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 23742 | 0.67 | 0.735325 |
Target: 5'- gCCgCCCAGGCCGcGUgCGGCGGcGGcGAc -3' miRNA: 3'- -GG-GGGUUUGGUaCAgGCCGUC-CCcCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 20662 | 0.67 | 0.735325 |
Target: 5'- gCCCCCGG--CGUG-CCGGCgucGGGGcGGGg -3' miRNA: 3'- -GGGGGUUugGUACaGGCCG---UCCC-CCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 85733 | 0.67 | 0.754157 |
Target: 5'- gCCCCGAACCcugcgGUCCGGagccgcgcggcCAcgucguccGGGGGGu -3' miRNA: 3'- gGGGGUUUGGua---CAGGCC-----------GU--------CCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 26689 | 0.67 | 0.754157 |
Target: 5'- gCCCCCAccGCCcggcGUGggcCCGGgGGGcGGGGc -3' miRNA: 3'- -GGGGGUu-UGG----UACa--GGCCgUCC-CCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 66636 | 0.67 | 0.754157 |
Target: 5'- gCUCCAgGGCCGgcuccaacCCGcGCGGGGGGAg -3' miRNA: 3'- gGGGGU-UUGGUaca-----GGC-CGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 33051 | 0.67 | 0.744788 |
Target: 5'- gCCCCGGGCCGggaacCCGGaaaagccucCGGGGGGc -3' miRNA: 3'- gGGGGUUUGGUaca--GGCC---------GUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 119954 | 0.67 | 0.743845 |
Target: 5'- gCCCCC--ACCAgcUGUCUcccgcugGGCAGGcGGAg -3' miRNA: 3'- -GGGGGuuUGGU--ACAGG-------CCGUCCcCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 41541 | 0.68 | 0.646366 |
Target: 5'- gUCCCGugggGACCAUGgauaUCCGGUAGacgggcaGGGGAg -3' miRNA: 3'- gGGGGU----UUGGUAC----AGGCCGUC-------CCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 149522 | 0.68 | 0.656291 |
Target: 5'- aCCCCCAacagggcGACCccgGUCCcuguauauauagGGuCAGGGGGu -3' miRNA: 3'- -GGGGGU-------UUGGua-CAGG------------CC-GUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 109221 | 0.68 | 0.657283 |
Target: 5'- gCUCCCuuAgCGUGgggCCgGGCGGGGcGGAa -3' miRNA: 3'- -GGGGGuuUgGUACa--GG-CCGUCCC-CCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 148173 | 0.68 | 0.657283 |
Target: 5'- gCCUCUgcguggggGGGCgCGgggcGUCCGGCGGGGGGc -3' miRNA: 3'- -GGGGG--------UUUG-GUa---CAGGCCGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 2456 | 0.68 | 0.667189 |
Target: 5'- gCCCCCGgcGGCCccGUggGGguGGGGGu -3' miRNA: 3'- -GGGGGU--UUGGuaCAggCCguCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 19348 | 0.68 | 0.668178 |
Target: 5'- cCCCCCAAGCCuccgGggggcccuacggccaCCGauGCGGGGGGc -3' miRNA: 3'- -GGGGGUUUGGua--Ca--------------GGC--CGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 114849 | 0.68 | 0.686912 |
Target: 5'- gCUCCAGgugGCCcgGcacgaaaCUGGCGGGGGGGu -3' miRNA: 3'- gGGGGUU---UGGuaCa------GGCCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 76043 | 0.68 | 0.696713 |
Target: 5'- gCCCCUGgcgcGGCUucUGcggCUGGCGGGGGGGc -3' miRNA: 3'- -GGGGGU----UUGGu-ACa--GGCCGUCCCCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 21173 | 0.68 | 0.696713 |
Target: 5'- aCCCCGAGCCcagaCCGcgacgaGCGGGGGGc -3' miRNA: 3'- gGGGGUUUGGuacaGGC------CGUCCCCCu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 31418 | 0.68 | 0.696713 |
Target: 5'- aCCagCCAAuCCGUGUCgGGgAGGGGa- -3' miRNA: 3'- -GGg-GGUUuGGUACAGgCCgUCCCCcu -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 74037 | 0.69 | 0.637423 |
Target: 5'- gCCCCgAGGCCGUucagGUUCGGCuGGaGGAg -3' miRNA: 3'- -GGGGgUUUGGUA----CAGGCCGuCCcCCU- -5' |
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5991 | 5' | -59.4 | NC_001806.1 | + | 67901 | 0.69 | 0.627483 |
Target: 5'- uCCCCCGGGCCuggGUCCGcgaaCGGGaugccGGGAc -3' miRNA: 3'- -GGGGGUUUGGua-CAGGCc---GUCC-----CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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