miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5991 5' -59.4 NC_001806.1 + 151318 0.66 0.799315
Target:  5'- gCCUCUGGcGCCGgcUCgGGCGGGGGGc -3'
miRNA:   3'- -GGGGGUU-UGGUacAGgCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 151258 0.74 0.363035
Target:  5'- cCCCCCGGGCCcacgCCgGGCGGuGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGuacaGG-CCGUC-CCCCU- -5'
5991 5' -59.4 NC_001806.1 + 149522 0.68 0.656291
Target:  5'- aCCCCCAacagggcGACCccgGUCCcuguauauauagGGuCAGGGGGu -3'
miRNA:   3'- -GGGGGU-------UUGGua-CAGG------------CC-GUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 149303 0.69 0.60762
Target:  5'- cCCCCCuaGAugCGUGUgaGuaAGGGGGGc -3'
miRNA:   3'- -GGGGG--UUugGUACAggCcgUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148948 0.7 0.572076
Target:  5'- cCCCCCAcuucggucuCCGccucagagucgcugcUGUCCGGCAGGucucggucgcaGGGAa -3'
miRNA:   3'- -GGGGGUuu-------GGU---------------ACAGGCCGUCC-----------CCCU- -5'
5991 5' -59.4 NC_001806.1 + 148785 0.7 0.529361
Target:  5'- gCCCCCGcaacuGCCGggGUCUuccucGCGGGGGGGg -3'
miRNA:   3'- -GGGGGUu----UGGUa-CAGGc----CGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 148173 0.68 0.657283
Target:  5'- gCCUCUgcguggggGGGCgCGgggcGUCCGGCGGGGGGc -3'
miRNA:   3'- -GGGGG--------UUUG-GUa---CAGGCCGUCCCCCu -5'
5991 5' -59.4 NC_001806.1 + 148108 0.71 0.473165
Target:  5'- -gUCCGAGCCGcGgCCGGCuGGGGGGc -3'
miRNA:   3'- ggGGGUUUGGUaCaGGCCGuCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 147365 0.67 0.706464
Target:  5'- gCCCUCuuGGCCccugCCGGCgcgAGGGGGGg -3'
miRNA:   3'- -GGGGGu-UUGGuacaGGCCG---UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 147328 0.69 0.597711
Target:  5'- cCCCCCcGGCCcUGagUCGGaGGGGGGGu -3'
miRNA:   3'- -GGGGGuUUGGuACa-GGCCgUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 143228 0.77 0.236569
Target:  5'- aCCCCCAAcCCGUG-CUGGUggugcggguuggGGGGGGAu -3'
miRNA:   3'- -GGGGGUUuGGUACaGGCCG------------UCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 136386 0.66 0.781623
Target:  5'- gCCUCCGcGACCGUGgccagCUGGCGGGucagcGGGu -3'
miRNA:   3'- -GGGGGU-UUGGUACa----GGCCGUCC-----CCCu -5'
5991 5' -59.4 NC_001806.1 + 119954 0.67 0.743845
Target:  5'- gCCCCC--ACCAgcUGUCUcccgcugGGCAGGcGGAg -3'
miRNA:   3'- -GGGGGuuUGGU--ACAGG-------CCGUCCcCCU- -5'
5991 5' -59.4 NC_001806.1 + 114849 0.68 0.686912
Target:  5'- gCUCCAGgugGCCcgGcacgaaaCUGGCGGGGGGGu -3'
miRNA:   3'- gGGGGUU---UGGuaCa------GGCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 113366 0.74 0.347741
Target:  5'- gCCCCUGGcGCUAUGUCCGGCGGcguuccGGGAc -3'
miRNA:   3'- -GGGGGUU-UGGUACAGGCCGUCc-----CCCU- -5'
5991 5' -59.4 NC_001806.1 + 109221 0.68 0.657283
Target:  5'- gCUCCCuuAgCGUGgggCCgGGCGGGGcGGAa -3'
miRNA:   3'- -GGGGGuuUgGUACa--GG-CCGUCCC-CCU- -5'
5991 5' -59.4 NC_001806.1 + 104902 0.66 0.799315
Target:  5'- cCCCCCAGGCCGUG-CUGGCGu----- -3'
miRNA:   3'- -GGGGGUUUGGUACaGGCCGUcccccu -5'
5991 5' -59.4 NC_001806.1 + 101277 0.66 0.771673
Target:  5'- aCCCagCCAcguaaaugggcacGGCCcUGUCgGGCAGGGGc- -3'
miRNA:   3'- -GGG--GGU-------------UUGGuACAGgCCGUCCCCcu -5'
5991 5' -59.4 NC_001806.1 + 99559 0.69 0.617546
Target:  5'- gCCUCCGguuggGAUCcgGUggCGGCGGGGGGGa -3'
miRNA:   3'- -GGGGGU-----UUGGuaCAg-GCCGUCCCCCU- -5'
5991 5' -59.4 NC_001806.1 + 96323 0.66 0.772583
Target:  5'- gCCCCCAGGCUAc--CUGaCGGGGGGc -3'
miRNA:   3'- -GGGGGUUUGGUacaGGCcGUCCCCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.