miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 84114 0.66 0.920163
Target:  5'- gCCaCGGUCCgCCAGUccuggGAAGcgcAUCGCGGg- -3'
miRNA:   3'- -GG-GCCGGG-GGUUA-----UUUC---UAGCGCCau -5'
5992 3' -55 NC_001806.1 + 91781 0.67 0.914395
Target:  5'- uCUCGGCCCU----GAAGcgCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGguuaUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 92761 0.66 0.930975
Target:  5'- aCCUGGCCCCCAacaacGUGAGcGAgcuggCGauGUAc -3'
miRNA:   3'- -GGGCCGGGGGU-----UAUUU-CUa----GCgcCAU- -5'
5992 3' -55 NC_001806.1 + 96251 0.77 0.392685
Target:  5'- aUCGGCCCCCGGUc--GGUCGUGGUc -3'
miRNA:   3'- gGGCCGGGGGUUAuuuCUAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 96473 0.7 0.792129
Target:  5'- cCCCGGCaCgCCu---GGGGUCGCGGc- -3'
miRNA:   3'- -GGGCCG-GgGGuuauUUCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 96774 0.74 0.54577
Target:  5'- aCCCGGCCCgagggucagaacuaCAcgGAGGGcUCGCGGUGg -3'
miRNA:   3'- -GGGCCGGGg-------------GUuaUUUCU-AGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 99539 0.72 0.67871
Target:  5'- cCCCGGCCUCCGcguuggaugccuccgGUuGGGAUC-CGGUGg -3'
miRNA:   3'- -GGGCCGGGGGU---------------UAuUUCUAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 102256 0.67 0.908387
Target:  5'- -gUGGCCCCgGcUGAGGAaCGCGGc- -3'
miRNA:   3'- ggGCCGGGGgUuAUUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 102433 0.67 0.904668
Target:  5'- -gCGGCCCCCGccggccgcgaacugcGUcuuGGGGAgcuugucgUCGCGGUAg -3'
miRNA:   3'- ggGCCGGGGGU---------------UA---UUUCU--------AGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 103689 0.67 0.908387
Target:  5'- cCCCcGCCCUCcGUGGAGGUgGgGGUu -3'
miRNA:   3'- -GGGcCGGGGGuUAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 106717 0.68 0.870424
Target:  5'- -gCGGCCCCCGGUAucgggucuuuguccuAGGGUcccugaCGCGGg- -3'
miRNA:   3'- ggGCCGGGGGUUAU---------------UUCUA------GCGCCau -5'
5992 3' -55 NC_001806.1 + 109395 0.71 0.694988
Target:  5'- aCCCcGCCCCCGAcccggcgauGGGUCGUGGg- -3'
miRNA:   3'- -GGGcCGGGGGUUauu------UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 113155 0.73 0.623249
Target:  5'- gCCUGGCCCacgggcggguCCGAU--GGGUCGCGGa- -3'
miRNA:   3'- -GGGCCGGG----------GGUUAuuUCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 113311 0.71 0.719138
Target:  5'- cCCCGGCCggCCCGggGGAGAUccaggccaccuggcgCGUGGUGa -3'
miRNA:   3'- -GGGCCGG--GGGUuaUUUCUA---------------GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 114549 0.66 0.936017
Target:  5'- cCCCGGCCCUgCGcgAccuGUCGCGGc- -3'
miRNA:   3'- -GGGCCGGGG-GUuaUuucUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 117052 0.68 0.874831
Target:  5'- gCCCGGCUagaCCCAcggGGGGGUgGgGGUGg -3'
miRNA:   3'- -GGGCCGG---GGGUua-UUUCUAgCgCCAU- -5'
5992 3' -55 NC_001806.1 + 118136 0.66 0.940819
Target:  5'- gCCUGGCCCCCGAUGAucuccUGCa--- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUucua-GCGccau -5'
5992 3' -55 NC_001806.1 + 120903 0.7 0.7641
Target:  5'- cCCCGGCCggauuCCCGGgccGGAGcUCGCGGc- -3'
miRNA:   3'- -GGGCCGG-----GGGUUa--UUUCuAGCGCCau -5'
5992 3' -55 NC_001806.1 + 123833 0.67 0.895658
Target:  5'- aUCCGGCCUCCGcgAgcGGcuucgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuaUuuCUa----GCGCCau -5'
5992 3' -55 NC_001806.1 + 125879 0.68 0.859841
Target:  5'- cCCCGGCCCCUcAUGGGGuuuuacgagGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGuUAUUUCuag------CGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.