miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 43033 0.78 0.351822
Target:  5'- gCUCGGCCCCCAGUAGAGAguUUGUGa-- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUUCU--AGCGCcau -5'
5992 3' -55 NC_001806.1 + 43126 0.67 0.914983
Target:  5'- uCCCGGCCgCCCGccucucccCGCGGUu -3'
miRNA:   3'- -GGGCCGG-GGGUuauuucuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 44731 0.72 0.654119
Target:  5'- uCCCGGCCCCgGuUGGAGGggggggcgccagUUGCGGg- -3'
miRNA:   3'- -GGGCCGGGGgUuAUUUCU------------AGCGCCau -5'
5992 3' -55 NC_001806.1 + 51505 0.66 0.940819
Target:  5'- -aCGGUUCCCGAgaguuuGAUCGUGGa- -3'
miRNA:   3'- ggGCCGGGGGUUauuu--CUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 52843 0.68 0.852031
Target:  5'- uCCCGGCCCgUAAc----GUCGCGGg- -3'
miRNA:   3'- -GGGCCGGGgGUUauuucUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 54879 0.67 0.908387
Target:  5'- aCCUGGCCgCCgCAGccucGGAGGUCaCGGUAg -3'
miRNA:   3'- -GGGCCGG-GG-GUUa---UUUCUAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 55151 0.76 0.454811
Target:  5'- aUCCGGCCCCaggccaAGUAAuacauucccuGGGUCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGg-----UUAUU----------UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 55267 0.68 0.852031
Target:  5'- gCCGGCCCCCuccgcccAGAgcaCGUGGg- -3'
miRNA:   3'- gGGCCGGGGGuuauu--UCUa--GCGCCau -5'
5992 3' -55 NC_001806.1 + 57110 0.68 0.872638
Target:  5'- aCCGGCCgCCAGUuuGAGccaggcguauauccgCGCGGUGg -3'
miRNA:   3'- gGGCCGGgGGUUAu-UUCua-------------GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 57895 0.68 0.84402
Target:  5'- cCCCGagcGCCCCCGcuu--GGUCGUGGg- -3'
miRNA:   3'- -GGGC---CGGGGGUuauuuCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 64030 0.67 0.900863
Target:  5'- gCgGGUCCCCAGguucagcauggcGGGGGUCGaCGGUAc -3'
miRNA:   3'- gGgCCGGGGGUUa-----------UUUCUAGC-GCCAU- -5'
5992 3' -55 NC_001806.1 + 67503 0.66 0.940819
Target:  5'- uCCCGaCCCCCuggGGAGcccugggccGUCGCGGc- -3'
miRNA:   3'- -GGGCcGGGGGuuaUUUC---------UAGCGCCau -5'
5992 3' -55 NC_001806.1 + 67619 0.67 0.895658
Target:  5'- uCCC-GCCCCaCAcgGAagGGGUUGCGGg- -3'
miRNA:   3'- -GGGcCGGGG-GUuaUU--UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 70520 0.78 0.336343
Target:  5'- cCCUGGCCCCCcgaggccAUGGGGGaCGCGGUGa -3'
miRNA:   3'- -GGGCCGGGGGu------UAUUUCUaGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 71100 0.69 0.801192
Target:  5'- cCUCGGCCCCCugggccAGAcGAcCGCGGUu -3'
miRNA:   3'- -GGGCCGGGGGuua---UUU-CUaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 74075 0.66 0.940819
Target:  5'- aCCCaGGCCCgucgggCGAUcGAGggCGCGGUu -3'
miRNA:   3'- -GGG-CCGGGg-----GUUAuUUCuaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 76282 0.69 0.810101
Target:  5'- aCCUGGCCgCCGccgcgGAGGAgauaucCGCGGUGc -3'
miRNA:   3'- -GGGCCGGgGGUua---UUUCUa-----GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 77286 0.68 0.873371
Target:  5'- aCCUGGCCCCaugggCGGUGGAGGaguuccggggcgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGG-----GUUAUUUCUa-----------GCGCCau -5'
5992 3' -55 NC_001806.1 + 78323 0.7 0.792129
Target:  5'- gCUCGGUCCCCGAgcuGGGAaccgagCGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGUUau-UUCUa-----GCGCCau -5'
5992 3' -55 NC_001806.1 + 79013 0.7 0.744806
Target:  5'- cCCCGGCCCCCcc----GAcgUGCGGUu -3'
miRNA:   3'- -GGGCCGGGGGuuauuuCUa-GCGCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.