miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 78323 0.7 0.792129
Target:  5'- gCUCGGUCCCCGAgcuGGGAaccgagCGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGUUau-UUCUa-----GCGCCau -5'
5992 3' -55 NC_001806.1 + 2824 0.69 0.801192
Target:  5'- gCUCGGgCCCCGggggcGUGGAGGggggCGCGGg- -3'
miRNA:   3'- -GGGCCgGGGGU-----UAUUUCUa---GCGCCau -5'
5992 3' -55 NC_001806.1 + 71100 0.69 0.801192
Target:  5'- cCUCGGCCCCCugggccAGAcGAcCGCGGUu -3'
miRNA:   3'- -GGGCCGGGGGuua---UUU-CUaGCGCCAu -5'
5992 3' -55 NC_001806.1 + 76282 0.69 0.810101
Target:  5'- aCCUGGCCgCCGccgcgGAGGAgauaucCGCGGUGc -3'
miRNA:   3'- -GGGCCGGgGGUua---UUUCUa-----GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 147227 0.69 0.810101
Target:  5'- -gCGGCCCCCGcg-GGGGUCGgGGc- -3'
miRNA:   3'- ggGCCGGGGGUuauUUCUAGCgCCau -5'
5992 3' -55 NC_001806.1 + 15919 0.69 0.818846
Target:  5'- aCCGGCgCUCCAAaugucGAcGGUCGUGGUAu -3'
miRNA:   3'- gGGCCG-GGGGUUa----UUuCUAGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 22897 0.69 0.822296
Target:  5'- gCCCGGCCCgCCAGccccccgcggccggAGGGAccCGCGGg- -3'
miRNA:   3'- -GGGCCGGG-GGUUa-------------UUUCUa-GCGCCau -5'
5992 3' -55 NC_001806.1 + 30840 0.69 0.832478
Target:  5'- cCUCGGCCCCCGcgcugcuucuGGGcCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuauu------UCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 2458 0.69 0.835813
Target:  5'- cCCCGGCggCCCCG-UGGGGGUgGgGGUu -3'
miRNA:   3'- -GGGCCG--GGGGUuAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 57895 0.68 0.84402
Target:  5'- cCCCGagcGCCCCCGcuu--GGUCGUGGg- -3'
miRNA:   3'- -GGGC---CGGGGGUuauuuCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 23675 0.68 0.84402
Target:  5'- aCCGGCCCUCAuguuuGAccCGCGGg- -3'
miRNA:   3'- gGGCCGGGGGUuauuuCUa-GCGCCau -5'
5992 3' -55 NC_001806.1 + 52843 0.68 0.852031
Target:  5'- uCCCGGCCCgUAAc----GUCGCGGg- -3'
miRNA:   3'- -GGGCCGGGgGUUauuucUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 24692 0.68 0.852031
Target:  5'- gCCGGCCcggCCCGGUGGcgcGGGcCGCGGa- -3'
miRNA:   3'- gGGCCGG---GGGUUAUU---UCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 5781 0.68 0.852031
Target:  5'- gCCCGGgCCCCGAcuucccGGUUcgGCGGUAa -3'
miRNA:   3'- -GGGCCgGGGGUUauuu--CUAG--CGCCAU- -5'
5992 3' -55 NC_001806.1 + 55267 0.68 0.852031
Target:  5'- gCCGGCCCCCuccgcccAGAgcaCGUGGg- -3'
miRNA:   3'- gGGCCGGGGGuuauu--UCUa--GCGCCau -5'
5992 3' -55 NC_001806.1 + 136835 0.68 0.85518
Target:  5'- cCCUGGCCCUCGguAUAccccagcugcccgugGAGAaucUCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGGU--UAU---------------UUCU---AGCGCCau -5'
5992 3' -55 NC_001806.1 + 125879 0.68 0.859841
Target:  5'- cCCCGGCCCCUcAUGGGGuuuuacgagGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGuUAUUUCuag------CGCCau -5'
5992 3' -55 NC_001806.1 + 29982 0.68 0.859841
Target:  5'- gUCUGGCCCCUccggGGGGGUUGgGGUu -3'
miRNA:   3'- -GGGCCGGGGGuua-UUUCUAGCgCCAu -5'
5992 3' -55 NC_001806.1 + 5053 0.68 0.867443
Target:  5'- aCCCgagGGCCCCCcgcuc--GUCGCGGUc -3'
miRNA:   3'- -GGG---CCGGGGGuuauuucUAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 106717 0.68 0.870424
Target:  5'- -gCGGCCCCCGGUAucgggucuuuguccuAGGGUcccugaCGCGGg- -3'
miRNA:   3'- ggGCCGGGGGUUAU---------------UUCUA------GCGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.