miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 102256 0.67 0.908387
Target:  5'- -gUGGCCCCgGcUGAGGAaCGCGGc- -3'
miRNA:   3'- ggGCCGGGGgUuAUUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 135610 0.67 0.908387
Target:  5'- uCCagGGCCCCCGcuGUugcgcgccGGAGcUCGCGGUc -3'
miRNA:   3'- -GGg-CCGGGGGU--UA--------UUUCuAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 103689 0.67 0.908387
Target:  5'- cCCCcGCCCUCcGUGGAGGUgGgGGUu -3'
miRNA:   3'- -GGGcCGGGGGuUAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 102433 0.67 0.904668
Target:  5'- -gCGGCCCCCGccggccgcgaacugcGUcuuGGGGAgcuugucgUCGCGGUAg -3'
miRNA:   3'- ggGCCGGGGGU---------------UA---UUUCU--------AGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 147547 0.67 0.90214
Target:  5'- gCCCGGCCCCCcc--GAGccgCGCGc-- -3'
miRNA:   3'- -GGGCCGGGGGuuauUUCua-GCGCcau -5'
5992 3' -55 NC_001806.1 + 24216 0.67 0.90214
Target:  5'- aCUGGCCCgCCGAc-GGGccCGCGGUGu -3'
miRNA:   3'- gGGCCGGG-GGUUauUUCuaGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 64030 0.67 0.900863
Target:  5'- gCgGGUCCCCAGguucagcauggcGGGGGUCGaCGGUAc -3'
miRNA:   3'- gGgCCGGGGGUUa-----------UUUCUAGC-GCCAU- -5'
5992 3' -55 NC_001806.1 + 147331 0.67 0.895658
Target:  5'- cCCCGGCCCUgAGUcGGAGGg-GgGGUGc -3'
miRNA:   3'- -GGGCCGGGGgUUA-UUUCUagCgCCAU- -5'
5992 3' -55 NC_001806.1 + 123833 0.67 0.895658
Target:  5'- aUCCGGCCUCCGcgAgcGGcuucgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuaUuuCUa----GCGCCau -5'
5992 3' -55 NC_001806.1 + 67619 0.67 0.895658
Target:  5'- uCCC-GCCCCaCAcgGAagGGGUUGCGGg- -3'
miRNA:   3'- -GGGcCGGGG-GUuaUU--UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 23335 0.67 0.888943
Target:  5'- gCCCGcGaCCCCCGAagacgaaGAAGAgcggCGCGGa- -3'
miRNA:   3'- -GGGC-C-GGGGGUUa------UUUCUa---GCGCCau -5'
5992 3' -55 NC_001806.1 + 131383 0.67 0.888943
Target:  5'- gCCUGGCCCauGAUGcAGGggGCGGUGa -3'
miRNA:   3'- -GGGCCGGGggUUAUuUCUagCGCCAU- -5'
5992 3' -55 NC_001806.1 + 127701 0.68 0.874831
Target:  5'- gCUGGCCgCCGuauGAGAUCGCGu-- -3'
miRNA:   3'- gGGCCGGgGGUuauUUCUAGCGCcau -5'
5992 3' -55 NC_001806.1 + 117052 0.68 0.874831
Target:  5'- gCCCGGCUagaCCCAcggGGGGGUgGgGGUGg -3'
miRNA:   3'- -GGGCCGG---GGGUua-UUUCUAgCgCCAU- -5'
5992 3' -55 NC_001806.1 + 77286 0.68 0.873371
Target:  5'- aCCUGGCCCCaugggCGGUGGAGGaguuccggggcgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGG-----GUUAUUUCUa-----------GCGCCau -5'
5992 3' -55 NC_001806.1 + 57110 0.68 0.872638
Target:  5'- aCCGGCCgCCAGUuuGAGccaggcguauauccgCGCGGUGg -3'
miRNA:   3'- gGGCCGGgGGUUAu-UUCua-------------GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 106717 0.68 0.870424
Target:  5'- -gCGGCCCCCGGUAucgggucuuuguccuAGGGUcccugaCGCGGg- -3'
miRNA:   3'- ggGCCGGGGGUUAU---------------UUCUA------GCGCCau -5'
5992 3' -55 NC_001806.1 + 5053 0.68 0.867443
Target:  5'- aCCCgagGGCCCCCcgcuc--GUCGCGGUc -3'
miRNA:   3'- -GGG---CCGGGGGuuauuucUAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 125879 0.68 0.859841
Target:  5'- cCCCGGCCCCUcAUGGGGuuuuacgagGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGuUAUUUCuag------CGCCau -5'
5992 3' -55 NC_001806.1 + 29982 0.68 0.859841
Target:  5'- gUCUGGCCCCUccggGGGGGUUGgGGUu -3'
miRNA:   3'- -GGGCCGGGGGuua-UUUCUAGCgCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.