Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5992 | 3' | -55 | NC_001806.1 | + | 136835 | 0.68 | 0.85518 |
Target: 5'- cCCUGGCCCUCGguAUAccccagcugcccgugGAGAaucUCGCGGa- -3' miRNA: 3'- -GGGCCGGGGGU--UAU---------------UUCU---AGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 55267 | 0.68 | 0.852031 |
Target: 5'- gCCGGCCCCCuccgcccAGAgcaCGUGGg- -3' miRNA: 3'- gGGCCGGGGGuuauu--UCUa--GCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 52843 | 0.68 | 0.852031 |
Target: 5'- uCCCGGCCCgUAAc----GUCGCGGg- -3' miRNA: 3'- -GGGCCGGGgGUUauuucUAGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 24692 | 0.68 | 0.852031 |
Target: 5'- gCCGGCCcggCCCGGUGGcgcGGGcCGCGGa- -3' miRNA: 3'- gGGCCGG---GGGUUAUU---UCUaGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 5781 | 0.68 | 0.852031 |
Target: 5'- gCCCGGgCCCCGAcuucccGGUUcgGCGGUAa -3' miRNA: 3'- -GGGCCgGGGGUUauuu--CUAG--CGCCAU- -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 23675 | 0.68 | 0.84402 |
Target: 5'- aCCGGCCCUCAuguuuGAccCGCGGg- -3' miRNA: 3'- gGGCCGGGGGUuauuuCUa-GCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 57895 | 0.68 | 0.84402 |
Target: 5'- cCCCGagcGCCCCCGcuu--GGUCGUGGg- -3' miRNA: 3'- -GGGC---CGGGGGUuauuuCUAGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 2458 | 0.69 | 0.835813 |
Target: 5'- cCCCGGCggCCCCG-UGGGGGUgGgGGUu -3' miRNA: 3'- -GGGCCG--GGGGUuAUUUCUAgCgCCAu -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 30840 | 0.69 | 0.832478 |
Target: 5'- cCUCGGCCCCCGcgcugcuucuGGGcCGCGGg- -3' miRNA: 3'- -GGGCCGGGGGUuauu------UCUaGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 22897 | 0.69 | 0.822296 |
Target: 5'- gCCCGGCCCgCCAGccccccgcggccggAGGGAccCGCGGg- -3' miRNA: 3'- -GGGCCGGG-GGUUa-------------UUUCUa-GCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 15919 | 0.69 | 0.818846 |
Target: 5'- aCCGGCgCUCCAAaugucGAcGGUCGUGGUAu -3' miRNA: 3'- gGGCCG-GGGGUUa----UUuCUAGCGCCAU- -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 147227 | 0.69 | 0.810101 |
Target: 5'- -gCGGCCCCCGcg-GGGGUCGgGGc- -3' miRNA: 3'- ggGCCGGGGGUuauUUCUAGCgCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 76282 | 0.69 | 0.810101 |
Target: 5'- aCCUGGCCgCCGccgcgGAGGAgauaucCGCGGUGc -3' miRNA: 3'- -GGGCCGGgGGUua---UUUCUa-----GCGCCAU- -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 2824 | 0.69 | 0.801192 |
Target: 5'- gCUCGGgCCCCGggggcGUGGAGGggggCGCGGg- -3' miRNA: 3'- -GGGCCgGGGGU-----UAUUUCUa---GCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 71100 | 0.69 | 0.801192 |
Target: 5'- cCUCGGCCCCCugggccAGAcGAcCGCGGUu -3' miRNA: 3'- -GGGCCGGGGGuua---UUU-CUaGCGCCAu -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 96473 | 0.7 | 0.792129 |
Target: 5'- cCCCGGCaCgCCu---GGGGUCGCGGc- -3' miRNA: 3'- -GGGCCG-GgGGuuauUUCUAGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 78323 | 0.7 | 0.792129 |
Target: 5'- gCUCGGUCCCCGAgcuGGGAaccgagCGCGGc- -3' miRNA: 3'- -GGGCCGGGGGUUau-UUCUa-----GCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 120903 | 0.7 | 0.7641 |
Target: 5'- cCCCGGCCggauuCCCGGgccGGAGcUCGCGGc- -3' miRNA: 3'- -GGGCCGG-----GGGUUa--UUUCuAGCGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 149657 | 0.7 | 0.763146 |
Target: 5'- gCCCGGCUCCCGuguaugaGUGGGGGUCccccaacaugGCGGc- -3' miRNA: 3'- -GGGCCGGGGGU-------UAUUUCUAG----------CGCCau -5' |
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5992 | 3' | -55 | NC_001806.1 | + | 147097 | 0.7 | 0.754507 |
Target: 5'- cCUCGGCCCCCGcggcccaGAAGcagCGCGGg- -3' miRNA: 3'- -GGGCCGGGGGUua-----UUUCua-GCGCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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