miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 70520 0.78 0.336343
Target:  5'- cCCUGGCCCCCcgaggccAUGGGGGaCGCGGUGa -3'
miRNA:   3'- -GGGCCGGGGGu------UAUUUCUaGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 43033 0.78 0.351822
Target:  5'- gCUCGGCCCCCAGUAGAGAguUUGUGa-- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUUCU--AGCGCcau -5'
5992 3' -55 NC_001806.1 + 96251 0.77 0.392685
Target:  5'- aUCGGCCCCCGGUc--GGUCGUGGUc -3'
miRNA:   3'- gGGCCGGGGGUUAuuuCUAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 55151 0.76 0.454811
Target:  5'- aUCCGGCCCCaggccaAGUAAuacauucccuGGGUCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGg-----UUAUU----------UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 150171 0.74 0.531787
Target:  5'- gCCCGGCCCCCGAUuuGGGggcccaaccCGGUGu -3'
miRNA:   3'- -GGGCCGGGGGUUAuuUCUagc------GCCAU- -5'
5992 3' -55 NC_001806.1 + 140956 0.74 0.541762
Target:  5'- uCCgGGCCCCCGuGUAAAGGUUGgucaGGUGa -3'
miRNA:   3'- -GGgCCGGGGGU-UAUUUCUAGCg---CCAU- -5'
5992 3' -55 NC_001806.1 + 96774 0.74 0.54577
Target:  5'- aCCCGGCCCgagggucagaacuaCAcgGAGGGcUCGCGGUGg -3'
miRNA:   3'- -GGGCCGGGg-------------GUuaUUUCU-AGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 30281 0.74 0.562903
Target:  5'- cCCCGGCCCCCGGggcGGAgccggccgcccgcccCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGGUUauuUCUa--------------GCGCCau -5'
5992 3' -55 NC_001806.1 + 26684 0.73 0.612962
Target:  5'- cCCCGGCCCCCAccgcccggcGUGGgcccGGGggGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGU---------UAUU----UCUagCGCCau -5'
5992 3' -55 NC_001806.1 + 113155 0.73 0.623249
Target:  5'- gCCUGGCCCacgggcggguCCGAU--GGGUCGCGGa- -3'
miRNA:   3'- -GGGCCGGG----------GGUUAuuUCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 44731 0.72 0.654119
Target:  5'- uCCCGGCCCCgGuUGGAGGggggggcgccagUUGCGGg- -3'
miRNA:   3'- -GGGCCGGGGgUuAUUUCU------------AGCGCCau -5'
5992 3' -55 NC_001806.1 + 99539 0.72 0.67871
Target:  5'- cCCCGGCCUCCGcguuggaugccuccgGUuGGGAUC-CGGUGg -3'
miRNA:   3'- -GGGCCGGGGGU---------------UAuUUCUAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 109395 0.71 0.694988
Target:  5'- aCCCcGCCCCCGAcccggcgauGGGUCGUGGg- -3'
miRNA:   3'- -GGGcCGGGGGUUauu------UCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 113311 0.71 0.719138
Target:  5'- cCCCGGCCggCCCGggGGAGAUccaggccaccuggcgCGUGGUGa -3'
miRNA:   3'- -GGGCCGG--GGGUuaUUUCUA---------------GCGCCAU- -5'
5992 3' -55 NC_001806.1 + 79013 0.7 0.744806
Target:  5'- cCCCGGCCCCCcc----GAcgUGCGGUu -3'
miRNA:   3'- -GGGCCGGGGGuuauuuCUa-GCGCCAu -5'
5992 3' -55 NC_001806.1 + 147097 0.7 0.754507
Target:  5'- cCUCGGCCCCCGcggcccaGAAGcagCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUua-----UUUCua-GCGCCau -5'
5992 3' -55 NC_001806.1 + 133120 0.7 0.754507
Target:  5'- -aCGGCCagCUCGGUGAAGuUCGCGGUc -3'
miRNA:   3'- ggGCCGG--GGGUUAUUUCuAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 149657 0.7 0.763146
Target:  5'- gCCCGGCUCCCGuguaugaGUGGGGGUCccccaacaugGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGU-------UAUUUCUAG----------CGCCau -5'
5992 3' -55 NC_001806.1 + 120903 0.7 0.7641
Target:  5'- cCCCGGCCggauuCCCGGgccGGAGcUCGCGGc- -3'
miRNA:   3'- -GGGCCGG-----GGGUUa--UUUCuAGCGCCau -5'
5992 3' -55 NC_001806.1 + 78323 0.7 0.792129
Target:  5'- gCUCGGUCCCCGAgcuGGGAaccgagCGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGUUau-UUCUa-----GCGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.