miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 2458 0.69 0.835813
Target:  5'- cCCCGGCggCCCCG-UGGGGGUgGgGGUu -3'
miRNA:   3'- -GGGCCG--GGGGUuAUUUCUAgCgCCAu -5'
5992 3' -55 NC_001806.1 + 2824 0.69 0.801192
Target:  5'- gCUCGGgCCCCGggggcGUGGAGGggggCGCGGg- -3'
miRNA:   3'- -GGGCCgGGGGU-----UAUUUCUa---GCGCCau -5'
5992 3' -55 NC_001806.1 + 5053 0.68 0.867443
Target:  5'- aCCCgagGGCCCCCcgcuc--GUCGCGGUc -3'
miRNA:   3'- -GGG---CCGGGGGuuauuucUAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 5781 0.68 0.852031
Target:  5'- gCCCGGgCCCCGAcuucccGGUUcgGCGGUAa -3'
miRNA:   3'- -GGGCCgGGGGUUauuu--CUAG--CGCCAU- -5'
5992 3' -55 NC_001806.1 + 13650 0.66 0.940819
Target:  5'- gCCGGaCCCCCG--GAGGGUCGgucagcUGGUc -3'
miRNA:   3'- gGGCC-GGGGGUuaUUUCUAGC------GCCAu -5'
5992 3' -55 NC_001806.1 + 14432 0.66 0.936017
Target:  5'- gCCgcaGGUCCCCGAU--GGGUgGCGGc- -3'
miRNA:   3'- -GGg--CCGGGGGUUAuuUCUAgCGCCau -5'
5992 3' -55 NC_001806.1 + 15919 0.69 0.818846
Target:  5'- aCCGGCgCUCCAAaugucGAcGGUCGUGGUAu -3'
miRNA:   3'- gGGCCG-GGGGUUa----UUuCUAGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 17857 0.67 0.914395
Target:  5'- cCCgCGGCCCCCAAccacccccUGGAGAcccugcUCaGcCGGUAc -3'
miRNA:   3'- -GG-GCCGGGGGUU--------AUUUCU------AG-C-GCCAU- -5'
5992 3' -55 NC_001806.1 + 19217 0.67 0.908387
Target:  5'- aCCCGGgCCCgCuu---GGGUCGUGGg- -3'
miRNA:   3'- -GGGCCgGGG-GuuauuUCUAGCGCCau -5'
5992 3' -55 NC_001806.1 + 22897 0.69 0.822296
Target:  5'- gCCCGGCCCgCCAGccccccgcggccggAGGGAccCGCGGg- -3'
miRNA:   3'- -GGGCCGGG-GGUUa-------------UUUCUa-GCGCCau -5'
5992 3' -55 NC_001806.1 + 23335 0.67 0.888943
Target:  5'- gCCCGcGaCCCCCGAagacgaaGAAGAgcggCGCGGa- -3'
miRNA:   3'- -GGGC-C-GGGGGUUa------UUUCUa---GCGCCau -5'
5992 3' -55 NC_001806.1 + 23675 0.68 0.84402
Target:  5'- aCCGGCCCUCAuguuuGAccCGCGGg- -3'
miRNA:   3'- gGGCCGGGGGUuauuuCUa-GCGCCau -5'
5992 3' -55 NC_001806.1 + 24216 0.67 0.90214
Target:  5'- aCUGGCCCgCCGAc-GGGccCGCGGUGu -3'
miRNA:   3'- gGGCCGGG-GGUUauUUCuaGCGCCAU- -5'
5992 3' -55 NC_001806.1 + 24692 0.68 0.852031
Target:  5'- gCCGGCCcggCCCGGUGGcgcGGGcCGCGGa- -3'
miRNA:   3'- gGGCCGG---GGGUUAUU---UCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 25497 0.66 0.920163
Target:  5'- gCCCGaaccCCCCCGA--GGGAgCGCGGg- -3'
miRNA:   3'- -GGGCc---GGGGGUUauUUCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 26684 0.73 0.612962
Target:  5'- cCCCGGCCCCCAccgcccggcGUGGgcccGGGggGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGU---------UAUU----UCUagCGCCau -5'
5992 3' -55 NC_001806.1 + 29982 0.68 0.859841
Target:  5'- gUCUGGCCCCUccggGGGGGUUGgGGUu -3'
miRNA:   3'- -GGGCCGGGGGuua-UUUCUAGCgCCAu -5'
5992 3' -55 NC_001806.1 + 30281 0.74 0.562903
Target:  5'- cCCCGGCCCCCGGggcGGAgccggccgcccgcccCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGGUUauuUCUa--------------GCGCCau -5'
5992 3' -55 NC_001806.1 + 30840 0.69 0.832478
Target:  5'- cCUCGGCCCCCGcgcugcuucuGGGcCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuauu------UCUaGCGCCau -5'
5992 3' -55 NC_001806.1 + 41810 0.66 0.940819
Target:  5'- uCCaCGGCCCCgCAAUAcgcGGggGCGGg- -3'
miRNA:   3'- -GG-GCCGGGG-GUUAUuu-CUagCGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.