miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5992 3' -55 NC_001806.1 + 150171 0.74 0.531787
Target:  5'- gCCCGGCCCCCGAUuuGGGggcccaaccCGGUGu -3'
miRNA:   3'- -GGGCCGGGGGUUAuuUCUagc------GCCAU- -5'
5992 3' -55 NC_001806.1 + 149657 0.7 0.763146
Target:  5'- gCCCGGCUCCCGuguaugaGUGGGGGUCccccaacaugGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGU-------UAUUUCUAG----------CGCCau -5'
5992 3' -55 NC_001806.1 + 147547 0.67 0.90214
Target:  5'- gCCCGGCCCCCcc--GAGccgCGCGc-- -3'
miRNA:   3'- -GGGCCGGGGGuuauUUCua-GCGCcau -5'
5992 3' -55 NC_001806.1 + 147331 0.67 0.895658
Target:  5'- cCCCGGCCCUgAGUcGGAGGg-GgGGUGc -3'
miRNA:   3'- -GGGCCGGGGgUUA-UUUCUagCgCCAU- -5'
5992 3' -55 NC_001806.1 + 147227 0.69 0.810101
Target:  5'- -gCGGCCCCCGcg-GGGGUCGgGGc- -3'
miRNA:   3'- ggGCCGGGGGUuauUUCUAGCgCCau -5'
5992 3' -55 NC_001806.1 + 147097 0.7 0.754507
Target:  5'- cCUCGGCCCCCGcggcccaGAAGcagCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUua-----UUUCua-GCGCCau -5'
5992 3' -55 NC_001806.1 + 144337 0.66 0.940819
Target:  5'- aUCCGGCCCCCcgccccgcgccGGUccauuAAGggCGCGcGUGc -3'
miRNA:   3'- -GGGCCGGGGG-----------UUAu----UUCuaGCGC-CAU- -5'
5992 3' -55 NC_001806.1 + 140956 0.74 0.541762
Target:  5'- uCCgGGCCCCCGuGUAAAGGUUGgucaGGUGa -3'
miRNA:   3'- -GGgCCGGGGGU-UAUUUCUAGCg---CCAU- -5'
5992 3' -55 NC_001806.1 + 140460 0.66 0.940819
Target:  5'- aCUCGGCCCCCGAggccAGcaugacguuAUCuCGGUGg -3'
miRNA:   3'- -GGGCCGGGGGUUauu-UC---------UAGcGCCAU- -5'
5992 3' -55 NC_001806.1 + 136835 0.68 0.85518
Target:  5'- cCCUGGCCCUCGguAUAccccagcugcccgugGAGAaucUCGCGGa- -3'
miRNA:   3'- -GGGCCGGGGGU--UAU---------------UUCU---AGCGCCau -5'
5992 3' -55 NC_001806.1 + 135610 0.67 0.908387
Target:  5'- uCCagGGCCCCCGcuGUugcgcgccGGAGcUCGCGGUc -3'
miRNA:   3'- -GGg-CCGGGGGU--UA--------UUUCuAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 134256 0.66 0.930975
Target:  5'- cCCCGGCagCCGgaAUGAGGAgcucgUCGgGGUGg -3'
miRNA:   3'- -GGGCCGggGGU--UAUUUCU-----AGCgCCAU- -5'
5992 3' -55 NC_001806.1 + 133120 0.7 0.754507
Target:  5'- -aCGGCCagCUCGGUGAAGuUCGCGGUc -3'
miRNA:   3'- ggGCCGG--GGGUUAUUUCuAGCGCCAu -5'
5992 3' -55 NC_001806.1 + 131383 0.67 0.888943
Target:  5'- gCCUGGCCCauGAUGcAGGggGCGGUGa -3'
miRNA:   3'- -GGGCCGGGggUUAUuUCUagCGCCAU- -5'
5992 3' -55 NC_001806.1 + 128859 0.66 0.940819
Target:  5'- gUCCGcGCCCCgGucaugccuuucGUGGGGggCGCGGa- -3'
miRNA:   3'- -GGGC-CGGGGgU-----------UAUUUCuaGCGCCau -5'
5992 3' -55 NC_001806.1 + 127701 0.68 0.874831
Target:  5'- gCUGGCCgCCGuauGAGAUCGCGu-- -3'
miRNA:   3'- gGGCCGGgGGUuauUUCUAGCGCcau -5'
5992 3' -55 NC_001806.1 + 125879 0.68 0.859841
Target:  5'- cCCCGGCCCCUcAUGGGGuuuuacgagGCGGc- -3'
miRNA:   3'- -GGGCCGGGGGuUAUUUCuag------CGCCau -5'
5992 3' -55 NC_001806.1 + 123833 0.67 0.895658
Target:  5'- aUCCGGCCUCCGcgAgcGGcuucgCGCGGg- -3'
miRNA:   3'- -GGGCCGGGGGUuaUuuCUa----GCGCCau -5'
5992 3' -55 NC_001806.1 + 120903 0.7 0.7641
Target:  5'- cCCCGGCCggauuCCCGGgccGGAGcUCGCGGc- -3'
miRNA:   3'- -GGGCCGG-----GGGUUa--UUUCuAGCGCCau -5'
5992 3' -55 NC_001806.1 + 118136 0.66 0.940819
Target:  5'- gCCUGGCCCCCGAUGAucuccUGCa--- -3'
miRNA:   3'- -GGGCCGGGGGUUAUUucua-GCGccau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.