miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 10870 0.69 0.700836
Target:  5'- cGCCCcguAGGCCCCGgaGCugGaAGCAa- -3'
miRNA:   3'- cCGGGu--UCCGGGGUa-UGugC-UCGUgg -5'
5993 5' -57.3 NC_001806.1 + 11352 0.68 0.777681
Target:  5'- aGCCCAGccGCCCCA---GCGGGCuCCg -3'
miRNA:   3'- cCGGGUUc-CGGGGUaugUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 12337 0.72 0.520826
Target:  5'- gGGcCCCAAGGCCCCGgcguccACAaaUGAGUuugauACCa -3'
miRNA:   3'- -CC-GGGUUCCGGGGUa-----UGU--GCUCG-----UGG- -5'
5993 5' -57.3 NC_001806.1 + 12425 0.73 0.48267
Target:  5'- aGGCCCAcgagcaccAGGCCCU--GCaACGGGCGgCa -3'
miRNA:   3'- -CCGGGU--------UCCGGGGuaUG-UGCUCGUgG- -5'
5993 5' -57.3 NC_001806.1 + 13616 0.66 0.869273
Target:  5'- gGGUCCGguAGGCCCgCcuggaugugGUACAC--GCGCCg -3'
miRNA:   3'- -CCGGGU--UCCGGG-G---------UAUGUGcuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 13800 0.67 0.83842
Target:  5'- cGGCCCccaaccuGGCggcagcccccCCCAUAC-CGGaacGCACCa -3'
miRNA:   3'- -CCGGGuu-----CCG----------GGGUAUGuGCU---CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 17261 0.68 0.759057
Target:  5'- uGGCCuuacaaaucugCAAGuGCCCCAaaucggACACGGGCcuguaauauACCa -3'
miRNA:   3'- -CCGG-----------GUUC-CGGGGUa-----UGUGCUCG---------UGG- -5'
5993 5' -57.3 NC_001806.1 + 18064 0.8 0.197033
Target:  5'- uGCCCGAGGUCCCAg--ACGAGCaACCc -3'
miRNA:   3'- cCGGGUUCCGGGGUaugUGCUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 19055 0.72 0.511169
Target:  5'- cGCCUcuGGGCCUgGcGCAcCGAGCGCCg -3'
miRNA:   3'- cCGGGu-UCCGGGgUaUGU-GCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 19119 0.7 0.650681
Target:  5'- gGGCCCGGGGCUgCGUuuCcCGGGUagACCg -3'
miRNA:   3'- -CCGGGUUCCGGgGUAu-GuGCUCG--UGG- -5'
5993 5' -57.3 NC_001806.1 + 20175 0.69 0.710732
Target:  5'- gGGCCCGcccccgGGGCCggcgcggagUCGgGCACG-GCGCCa -3'
miRNA:   3'- -CCGGGU------UCCGG---------GGUaUGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 20412 0.67 0.830232
Target:  5'- gGGCCCGGGGacggCCA---ACGGGCGCg -3'
miRNA:   3'- -CCGGGUUCCgg--GGUaugUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 20791 0.7 0.650681
Target:  5'- aGCCCGAGgacGCCCCGaucguccACACgGAGCGCg -3'
miRNA:   3'- cCGGGUUC---CGGGGUa------UGUG-CUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 21139 0.72 0.520826
Target:  5'- cGGCUCcccGGGCCCCAccgACGGGcCGCCg -3'
miRNA:   3'- -CCGGGu--UCCGGGGUaugUGCUC-GUGG- -5'
5993 5' -57.3 NC_001806.1 + 21283 0.77 0.295447
Target:  5'- cGCCCGgcgggacgggaGGGCCCCcgcgGCGGGCACCg -3'
miRNA:   3'- cCGGGU-----------UCCGGGGuaugUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 21516 0.79 0.215681
Target:  5'- cGGCCCGgggccgcgaacgggAGGCCCCGcUACGCG-GCGCg -3'
miRNA:   3'- -CCGGGU--------------UCCGGGGU-AUGUGCuCGUGg -5'
5993 5' -57.3 NC_001806.1 + 21855 0.73 0.492087
Target:  5'- cGCCCAA-GCCCCGggcgGCGgCGAGgACCc -3'
miRNA:   3'- cCGGGUUcCGGGGUa---UGU-GCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 21888 0.71 0.590092
Target:  5'- cGGCCUccgcGGGCCgCAU---CGAGCGCCg -3'
miRNA:   3'- -CCGGGu---UCCGGgGUAuguGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 22057 0.73 0.501588
Target:  5'- uGGCCCGgcgccGGGCCCCcgcccccgGgGCGGGUGCUg -3'
miRNA:   3'- -CCGGGU-----UCCGGGGua------UgUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 22162 0.73 0.461349
Target:  5'- cGGUUCGAGGCCUCGgGCGCcccggcggccguguGGGCGCCc -3'
miRNA:   3'- -CCGGGUUCCGGGGUaUGUG--------------CUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.