miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 3589 0.75 0.377405
Target:  5'- -cCCCGcGGCgCCGUACccgGCGGGCACCg -3'
miRNA:   3'- ccGGGUuCCGgGGUAUG---UGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3672 0.71 0.590092
Target:  5'- cGGCgCCGGGGCUCCc--CGCGgcccccgucAGCGCCg -3'
miRNA:   3'- -CCG-GGUUCCGGGGuauGUGC---------UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3788 0.66 0.861105
Target:  5'- cGGCUCAuGGCCacggcggCCGc-CGCGuGCGCCa -3'
miRNA:   3'- -CCGGGUuCCGG-------GGUauGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 4052 0.69 0.700836
Target:  5'- cGCCCAgcucGGGCgCCC--ACACGGcCGCCg -3'
miRNA:   3'- cCGGGU----UCCG-GGGuaUGUGCUcGUGG- -5'
5993 5' -57.3 NC_001806.1 + 4085 0.76 0.323553
Target:  5'- cGCCCGAGGCCUCGaACcgGCGucGCGCCu -3'
miRNA:   3'- cCGGGUUCCGGGGUaUG--UGCu-CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 4138 0.72 0.5374
Target:  5'- aGGCCCGggcggcugucgcccAGGCCgCCGUACA---GCACCc -3'
miRNA:   3'- -CCGGGU--------------UCCGG-GGUAUGUgcuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 4309 0.7 0.646639
Target:  5'- cGGCCCGuggcgucgcggccGGCCaCCGccGCGCGGGC-CCg -3'
miRNA:   3'- -CCGGGUu------------CCGG-GGUa-UGUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 4744 0.68 0.759057
Target:  5'- cGGgCCGGGGCCCgGU-CGCcGGCGgCg -3'
miRNA:   3'- -CCgGGUUCCGGGgUAuGUGcUCGUgG- -5'
5993 5' -57.3 NC_001806.1 + 5099 0.68 0.768429
Target:  5'- cGGCCCGucggugGGGCCCgGggaGCcgGGGCGCUg -3'
miRNA:   3'- -CCGGGU------UCCGGGgUaugUG--CUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 5522 0.66 0.846424
Target:  5'- cGGCCCcccGCCCCcccgGCGGGC-CCa -3'
miRNA:   3'- -CCGGGuucCGGGGuaugUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 5614 0.68 0.772144
Target:  5'- cGGCCCGuuggucgaacccccGGCCCCGccCAUccGCGCCa -3'
miRNA:   3'- -CCGGGUu-------------CCGGGGUauGUGcuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 5779 0.7 0.64765
Target:  5'- gGGCCC-GGGCCCCgacuucccgGUucggcgguaaugagAUACGAGCcCCg -3'
miRNA:   3'- -CCGGGuUCCGGGG---------UA--------------UGUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 6057 0.72 0.511169
Target:  5'- uGCCCGAcuccgcgccGGCCCCGgGgGCGGGC-CCg -3'
miRNA:   3'- cCGGGUU---------CCGGGGUaUgUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 7018 0.67 0.804643
Target:  5'- -aCCCAAcccccGGCCCCAguuggGC-CGGGCgACCc -3'
miRNA:   3'- ccGGGUU-----CCGGGGUa----UGuGCUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 7279 0.67 0.804643
Target:  5'- -cCCCGGGaGCCCCGgguucCGCGAcCACCc -3'
miRNA:   3'- ccGGGUUC-CGGGGUau---GUGCUcGUGG- -5'
5993 5' -57.3 NC_001806.1 + 7493 0.66 0.868541
Target:  5'- aGCCCGGGcaaguauGCCCCccugGCGAGC-CCa -3'
miRNA:   3'- cCGGGUUC-------CGGGGuaugUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 7806 0.67 0.813336
Target:  5'- gGGCCauguuGGGCCgCCAcGCGCG-GCugguCCa -3'
miRNA:   3'- -CCGGgu---UCCGG-GGUaUGUGCuCGu---GG- -5'
5993 5' -57.3 NC_001806.1 + 9637 0.68 0.756224
Target:  5'- -aCCCGAGGCCCUgcuuuuaaccgcccGccagGCACGccuGCGCCa -3'
miRNA:   3'- ccGGGUUCCGGGG--------------Ua---UGUGCu--CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 9732 0.68 0.749576
Target:  5'- cGGCCCccaucaccGCCCCuaacCGCaGGGCGCCg -3'
miRNA:   3'- -CCGGGuuc-----CGGGGuau-GUG-CUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 10411 0.68 0.759057
Target:  5'- aGCCgGgGGGUCCCGcugGCGgGAGUGCCg -3'
miRNA:   3'- cCGGgU-UCCGGGGUa--UGUgCUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.