miRNA display CGI


Results 1 - 20 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 710 0.68 0.777681
Target:  5'- aGCCCuccccGGCCCCAgcccuccccgGCGCGucccGCGCUc -3'
miRNA:   3'- cCGGGuu---CCGGGGUa---------UGUGCu---CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1449 0.71 0.577053
Target:  5'- cGGCggCAGGGCCCCcgGgccgucgucgucgcCGCGcAGCACCa -3'
miRNA:   3'- -CCGg-GUUCCGGGGuaU--------------GUGC-UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1499 0.71 0.620347
Target:  5'- gGGCgUCGucgucGGGCUCCAgcaggGCGCGGGCGCa -3'
miRNA:   3'- -CCG-GGU-----UCCGGGGUa----UGUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 1548 0.66 0.868541
Target:  5'- cGGCCCGcgccaccGGGCCgggCCG---GCGcGCACCg -3'
miRNA:   3'- -CCGGGU-------UCCGG---GGUaugUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1588 0.69 0.720563
Target:  5'- cGCCCcAGcGCCaCGUACACGGGcCGCa -3'
miRNA:   3'- cCGGGuUC-CGGgGUAUGUGCUC-GUGg -5'
5993 5' -57.3 NC_001806.1 + 1622 0.74 0.428131
Target:  5'- cGCCC-AGGCCCCAgcGCGCGcaGGCGgCg -3'
miRNA:   3'- cCGGGuUCCGGGGUa-UGUGC--UCGUgG- -5'
5993 5' -57.3 NC_001806.1 + 1710 0.67 0.795797
Target:  5'- -cCCCGAGGCCgCCGcccgGC-CGuccAGCGCCg -3'
miRNA:   3'- ccGGGUUCCGG-GGUa---UGuGC---UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1748 0.72 0.560103
Target:  5'- cGGCCCGGcGGUaCUCGcgcggggACAUGGGCACCg -3'
miRNA:   3'- -CCGGGUU-CCG-GGGUa------UGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1918 0.78 0.27564
Target:  5'- cGGCCCGAGGCCagcaCCGUGCGgCGcaggucccGCGCCg -3'
miRNA:   3'- -CCGGGUUCCGG----GGUAUGU-GCu-------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 2303 0.67 0.813336
Target:  5'- cGGCCCccccGAGGCCCCGc-CGCcGGCcagguCCu -3'
miRNA:   3'- -CCGGG----UUCCGGGGUauGUGcUCGu----GG- -5'
5993 5' -57.3 NC_001806.1 + 2394 0.7 0.63046
Target:  5'- uGGCgCAuccAGGCCgCCAUGCggcgcaGCGGGC-CCg -3'
miRNA:   3'- -CCGgGU---UCCGG-GGUAUG------UGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 2557 0.72 0.540344
Target:  5'- aGG-CCAGGGCCCgCGggucaaACAUGAGgGCCg -3'
miRNA:   3'- -CCgGGUUCCGGG-GUa-----UGUGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 2653 0.71 0.610244
Target:  5'- aGGCcuCCAGGGCggCGgcCGCGGGCGCCg -3'
miRNA:   3'- -CCG--GGUUCCGggGUauGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 2733 0.68 0.739994
Target:  5'- gGGCCCucggcGGGCCggcgcgacacggCCAcgggGCGCGGGCggGCCu -3'
miRNA:   3'- -CCGGGu----UCCGG------------GGUa---UGUGCUCG--UGG- -5'
5993 5' -57.3 NC_001806.1 + 2791 0.69 0.690883
Target:  5'- cGGCCCGGGGCgCCGcggGCugG-GCGg- -3'
miRNA:   3'- -CCGGGUUCCGgGGUa--UGugCuCGUgg -5'
5993 5' -57.3 NC_001806.1 + 2822 0.77 0.30996
Target:  5'- gGGCUC-GGGCCCCGggggcguggagggggGCGCGGGCGCg -3'
miRNA:   3'- -CCGGGuUCCGGGGUa--------------UGUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 3143 0.82 0.148948
Target:  5'- gGGCCCAGGGCCCCGgcgaccaggcuCACGGcGCGCa -3'
miRNA:   3'- -CCGGGUUCCGGGGUau---------GUGCU-CGUGg -5'
5993 5' -57.3 NC_001806.1 + 3207 0.75 0.369353
Target:  5'- cGGCCaCGcgcAGGuCCCCGcgcaggcGCAUGAGCACCa -3'
miRNA:   3'- -CCGG-GU---UCC-GGGGUa------UGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3326 0.67 0.821868
Target:  5'- gGGCCCGcGGGUCCCuccgGCcgcggggggcugGCGGGCcggGCCc -3'
miRNA:   3'- -CCGGGU-UCCGGGGua--UG------------UGCUCG---UGG- -5'
5993 5' -57.3 NC_001806.1 + 3459 0.68 0.759057
Target:  5'- cGGCCaCGcGGCCggCCuggGCGCG-GCGCCc -3'
miRNA:   3'- -CCGG-GUuCCGG--GGua-UGUGCuCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.