miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 77533 0.89 0.052564
Target:  5'- aGGCCCGGGGCCCCuggugcUGCGCGAGgcCACCa -3'
miRNA:   3'- -CCGGGUUCCGGGGu-----AUGUGCUC--GUGG- -5'
5993 5' -57.3 NC_001806.1 + 46106 0.88 0.060073
Target:  5'- cGGCCCGGGGCCU---GCGCGGGCGCCu -3'
miRNA:   3'- -CCGGGUUCCGGGguaUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 30230 0.88 0.060073
Target:  5'- cGGCCgu-GGCCCCGUGCguGCGAGCGCCg -3'
miRNA:   3'- -CCGGguuCCGGGGUAUG--UGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 88963 0.83 0.128474
Target:  5'- uGGUCCAcgccGCCCCAcagGCGCGAGCGCCg -3'
miRNA:   3'- -CCGGGUuc--CGGGGUa--UGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 119277 0.82 0.142295
Target:  5'- uGGCCC--GGCCCCAcGCGgGGGCGCCc -3'
miRNA:   3'- -CCGGGuuCCGGGGUaUGUgCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3143 0.82 0.148948
Target:  5'- gGGCCCAGGGCCCCGgcgaccaggcuCACGGcGCGCa -3'
miRNA:   3'- -CCGGGUUCCGGGGUau---------GUGCU-CGUGg -5'
5993 5' -57.3 NC_001806.1 + 84831 0.82 0.157464
Target:  5'- cGGCCC-GGGCCCUAUcacgGCAagGAGCGCCg -3'
miRNA:   3'- -CCGGGuUCCGGGGUA----UGUg-CUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 27064 0.81 0.161478
Target:  5'- gGGCCCGAGG-CCCGUGCcCGGGC-CCu -3'
miRNA:   3'- -CCGGGUUCCgGGGUAUGuGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 92473 0.81 0.178471
Target:  5'- cGUCCGAGGCCgCCAagGCGCGGGuCGCCa -3'
miRNA:   3'- cCGGGUUCCGG-GGUa-UGUGCUC-GUGG- -5'
5993 5' -57.3 NC_001806.1 + 150899 0.8 0.197033
Target:  5'- gGGCCUcGGGCCCCAgGCACG-GC-CCg -3'
miRNA:   3'- -CCGGGuUCCGGGGUaUGUGCuCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 18064 0.8 0.197033
Target:  5'- uGCCCGAGGUCCCAg--ACGAGCaACCc -3'
miRNA:   3'- cCGGGUUCCGGGGUaugUGCUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 145007 0.8 0.20193
Target:  5'- cGGCCCGGGGCCCCAca-ACGgcccGGCGCa -3'
miRNA:   3'- -CCGGGUUCCGGGGUaugUGC----UCGUGg -5'
5993 5' -57.3 NC_001806.1 + 21516 0.79 0.215681
Target:  5'- cGGCCCGgggccgcgaacgggAGGCCCCGcUACGCG-GCGCg -3'
miRNA:   3'- -CCGGGU--------------UCCGGGGU-AUGUGCuCGUGg -5'
5993 5' -57.3 NC_001806.1 + 54012 0.79 0.217258
Target:  5'- uGCCCAcgAGGCCCgCGaggGCACGAGgACCa -3'
miRNA:   3'- cCGGGU--UCCGGG-GUa--UGUGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 41231 0.79 0.241529
Target:  5'- uGGCCCAGGGCCUCGUggagccggcgaaaggGgACGGGCuCCu -3'
miRNA:   3'- -CCGGGUUCCGGGGUA---------------UgUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 76832 0.78 0.2509
Target:  5'- cGGCCC-GGGCCUCcUACGCGAcagggcgcGCGCCu -3'
miRNA:   3'- -CCGGGuUCCGGGGuAUGUGCU--------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 24796 0.78 0.2509
Target:  5'- cGGCCCGGGGgCCCugcCGCcGGCGCCg -3'
miRNA:   3'- -CCGGGUUCCgGGGuauGUGcUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 1918 0.78 0.27564
Target:  5'- cGGCCCGAGGCCagcaCCGUGCGgCGcaggucccGCGCCg -3'
miRNA:   3'- -CCGGGUUCCGG----GGUAUGU-GCu-------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 69565 0.77 0.288724
Target:  5'- gGGUCCAGGGCgCCA---GCGAGCACa -3'
miRNA:   3'- -CCGGGUUCCGgGGUaugUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 23110 0.77 0.295447
Target:  5'- gGGCCCuGGGCCCCGcgcUGcCGCGGgacccGCGCCu -3'
miRNA:   3'- -CCGGGuUCCGGGGU---AU-GUGCU-----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.