miRNA display CGI


Results 21 - 40 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 23110 0.77 0.295447
Target:  5'- gGGCCCuGGGCCCCGcgcUGcCGCGGgacccGCGCCu -3'
miRNA:   3'- -CCGGGuUCCGGGGU---AU-GUGCU-----CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 114347 0.77 0.302291
Target:  5'- uGCUCGGcGGCgCCcgACGCGGGCGCCa -3'
miRNA:   3'- cCGGGUU-CCGgGGuaUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 75686 0.77 0.302291
Target:  5'- cGGCCCAGcGcGCCCgCAguagcCACGAGCGCUg -3'
miRNA:   3'- -CCGGGUU-C-CGGG-GUau---GUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 2822 0.77 0.30996
Target:  5'- gGGCUC-GGGCCCCGggggcguggagggggGCGCGGGCGCg -3'
miRNA:   3'- -CCGGGuUCCGGGGUa--------------UGUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 147786 0.76 0.316344
Target:  5'- gGGCCCGGGGCggggggcggagCCUG-GCAUGGGCGCCg -3'
miRNA:   3'- -CCGGGUUCCG-----------GGGUaUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 41836 0.76 0.323553
Target:  5'- gGGCgUCAGGGCCCCGggcgcgUACguGCGAGCGCg -3'
miRNA:   3'- -CCG-GGUUCCGGGGU------AUG--UGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 4085 0.76 0.323553
Target:  5'- cGCCCGAGGCCUCGaACcgGCGucGCGCCu -3'
miRNA:   3'- cCGGGUUCCGGGGUaUG--UGCu-CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 25867 0.76 0.330884
Target:  5'- aGCCC-GGGCCCCc--CGCGGGCGCg -3'
miRNA:   3'- cCGGGuUCCGGGGuauGUGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 28186 0.76 0.330884
Target:  5'- gGGCC--GGGCgCCAUGuCugGGGCGCCa -3'
miRNA:   3'- -CCGGguUCCGgGGUAU-GugCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 133511 0.76 0.330884
Target:  5'- cGGCCCGGGGCCUUAUGgAgGA-CGCCu -3'
miRNA:   3'- -CCGGGUUCCGGGGUAUgUgCUcGUGG- -5'
5993 5' -57.3 NC_001806.1 + 24469 0.76 0.337585
Target:  5'- cGGCCCGGacacgccGGUgCCCAUguccccGCGCGAGUACCg -3'
miRNA:   3'- -CCGGGUU-------CCG-GGGUA------UGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 100745 0.76 0.338336
Target:  5'- cGCCCAGGuGCgCCCGgacaGCGCGAGCucgGCCu -3'
miRNA:   3'- cCGGGUUC-CG-GGGUa---UGUGCUCG---UGG- -5'
5993 5' -57.3 NC_001806.1 + 32978 0.76 0.34591
Target:  5'- gGGUCCGccgGGGCCCCGgGC-CGGGcCGCCa -3'
miRNA:   3'- -CCGGGU---UCCGGGGUaUGuGCUC-GUGG- -5'
5993 5' -57.3 NC_001806.1 + 144975 0.75 0.361419
Target:  5'- cGGCCCGGGGCCCCGgcggACccaAgGGGC-CCn -3'
miRNA:   3'- -CCGGGUUCCGGGGUa---UG---UgCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 96373 0.75 0.369353
Target:  5'- uGCgCCAGGGCgCCCccGCGCGggGGCGCCg -3'
miRNA:   3'- cCG-GGUUCCG-GGGuaUGUGC--UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 96641 0.75 0.369353
Target:  5'- cGCCgcGGGCCacgCCAcccUGCGCGAGCACCu -3'
miRNA:   3'- cCGGguUCCGG---GGU---AUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3207 0.75 0.369353
Target:  5'- cGGCCaCGcgcAGGuCCCCGcgcaggcGCAUGAGCACCa -3'
miRNA:   3'- -CCGG-GU---UCC-GGGGUa------UGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 3589 0.75 0.377405
Target:  5'- -cCCCGcGGCgCCGUACccgGCGGGCACCg -3'
miRNA:   3'- ccGGGUuCCGgGGUAUG---UGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 31104 0.75 0.385575
Target:  5'- cGGgCCGcGGUCCCcgGCugGAGcCGCCg -3'
miRNA:   3'- -CCgGGUuCCGGGGuaUGugCUC-GUGG- -5'
5993 5' -57.3 NC_001806.1 + 133004 0.75 0.402261
Target:  5'- aGCCCugGGCCggggCCGUcUugGAGCGCCu -3'
miRNA:   3'- cCGGGuuCCGG----GGUAuGugCUCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.