miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 78935 0.66 0.861858
Target:  5'- cGCCCGGGGCCcgCCGUGuCugGuGC-UCg -3'
miRNA:   3'- cCGGGUUCCGG--GGUAU-GugCuCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 79552 0.66 0.861858
Target:  5'- cGCCCGuGGGCCCC---CGCGAcgacuuccgGCGCUu -3'
miRNA:   3'- cCGGGU-UCCGGGGuauGUGCU---------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 101113 0.66 0.861858
Target:  5'- cGGCCCGcggGGGUCgUcgAcCACGgccAGCACCc -3'
miRNA:   3'- -CCGGGU---UCCGGgGuaU-GUGC---UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 122046 0.66 0.861858
Target:  5'- -aCCCGGGGCCCC-UugG-GAGaGCCa -3'
miRNA:   3'- ccGGGUUCCGGGGuAugUgCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 3788 0.66 0.861105
Target:  5'- cGGCUCAuGGCCacggcggCCGc-CGCGuGCGCCa -3'
miRNA:   3'- -CCGGGUuCCGG-------GGUauGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 68541 0.66 0.85731
Target:  5'- cGGCuCCGAcacGUCCCAUGCGCuGGauuccgccggccugcGCACCg -3'
miRNA:   3'- -CCG-GGUUc--CGGGGUAUGUG-CU---------------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 33368 0.66 0.85501
Target:  5'- gGGCCCGGagagccgcGGCaCCCGgACGCGcccggaaagucuuucGCACCa -3'
miRNA:   3'- -CCGGGUU--------CCG-GGGUaUGUGCu--------------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 33981 0.66 0.854239
Target:  5'- gGGCCgGGGGUCgCCGggGCAgGGGCGg- -3'
miRNA:   3'- -CCGGgUUCCGG-GGUa-UGUgCUCGUgg -5'
5993 5' -57.3 NC_001806.1 + 55874 0.66 0.854239
Target:  5'- aGGCCCAcccGCCCCGggccaUGCcCGA-CGCCu -3'
miRNA:   3'- -CCGGGUuc-CGGGGU-----AUGuGCUcGUGG- -5'
5993 5' -57.3 NC_001806.1 + 80559 0.66 0.854239
Target:  5'- aGCCCcaaccccaGCCCCAaaacggGCAUGuAGCACCc -3'
miRNA:   3'- cCGGGuuc-----CGGGGUa-----UGUGC-UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 106741 0.66 0.854239
Target:  5'- -uCCUAGGGUCCCugACGCGGGC-Cg -3'
miRNA:   3'- ccGGGUUCCGGGGuaUGUGCUCGuGg -5'
5993 5' -57.3 NC_001806.1 + 109508 0.66 0.854239
Target:  5'- aGGCCgcucacCAGGGCCuCCA---GCGAGCucgggaGCCg -3'
miRNA:   3'- -CCGG------GUUCCGG-GGUaugUGCUCG------UGG- -5'
5993 5' -57.3 NC_001806.1 + 25415 0.66 0.854239
Target:  5'- gGGCgaGGGGCgguggUgGUGCGCGGGCGCCc -3'
miRNA:   3'- -CCGggUUCCGg----GgUAUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 105414 0.66 0.854239
Target:  5'- -aCCCcAGGCUCCAUACcgACGAucuGCgACCu -3'
miRNA:   3'- ccGGGuUCCGGGGUAUG--UGCU---CG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 112242 0.66 0.854239
Target:  5'- cGGCCgCcuGGCCaCCAgggugGCcCGGGCgACCc -3'
miRNA:   3'- -CCGG-GuuCCGG-GGUa----UGuGCUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 123008 0.66 0.854239
Target:  5'- cGCCCAuggugAGGCCCgCcgACGCcucguccGCGCCc -3'
miRNA:   3'- cCGGGU-----UCCGGG-GuaUGUGcu-----CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 147985 0.66 0.854239
Target:  5'- gGGCCaGAcGCCCCc--CGCG-GCGCCg -3'
miRNA:   3'- -CCGGgUUcCGGGGuauGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 79103 0.66 0.854239
Target:  5'- cGCCaccgaCGAGGaCCCCuuccucGCGCGAGCuauCCu -3'
miRNA:   3'- cCGG-----GUUCC-GGGGua----UGUGCUCGu--GG- -5'
5993 5' -57.3 NC_001806.1 + 28220 0.66 0.853466
Target:  5'- gGGCgCCAuauugggGGGCgCCAUGUugGGGgACCc -3'
miRNA:   3'- -CCG-GGU-------UCCGgGGUAUGugCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 37077 0.66 0.849573
Target:  5'- aGGCCCGccaugcAGGCCCCGgggagguagaaaUGCAucuucucuccgacccCGA-CACCa -3'
miRNA:   3'- -CCGGGU------UCCGGGGU------------AUGU---------------GCUcGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.