miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 47567 0.66 0.846424
Target:  5'- cGGCCUcGGGCUCUAc-UACGaAGCGCUc -3'
miRNA:   3'- -CCGGGuUCCGGGGUauGUGC-UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 5522 0.66 0.846424
Target:  5'- cGGCCCcccGCCCCcccgGCGGGC-CCa -3'
miRNA:   3'- -CCGGGuucCGGGGuaugUGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 24546 0.66 0.846424
Target:  5'- cGGCCuCGGGGaCCaCCG-ACGCcauGGCGCCc -3'
miRNA:   3'- -CCGG-GUUCC-GG-GGUaUGUGc--UCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 36830 0.66 0.846424
Target:  5'- cGCCCAcccAGGCCgUAcGC-CGGGC-CCa -3'
miRNA:   3'- cCGGGU---UCCGGgGUaUGuGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 44942 0.66 0.846424
Target:  5'- uGCCCGGGGCUggCUA-GCGCGGGgGCg -3'
miRNA:   3'- cCGGGUUCCGG--GGUaUGUGCUCgUGg -5'
5993 5' -57.3 NC_001806.1 + 115094 0.66 0.846424
Target:  5'- cGGCCCAGcccGuCCCCGUGuuCGgGuGCGCCc -3'
miRNA:   3'- -CCGGGUUc--C-GGGGUAU--GUgCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 125683 0.66 0.846424
Target:  5'- cGUUCGAGcGCCaCC-UGCGCGGGUugCu -3'
miRNA:   3'- cCGGGUUC-CGG-GGuAUGUGCUCGugG- -5'
5993 5' -57.3 NC_001806.1 + 144594 0.66 0.846424
Target:  5'- cGGCUCuccGGGCCCCccUGCAgccgGGGCgGCCa -3'
miRNA:   3'- -CCGGGu--UCCGGGGu-AUGUg---CUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 13800 0.67 0.83842
Target:  5'- cGGCCCccaaccuGGCggcagcccccCCCAUAC-CGGaacGCACCa -3'
miRNA:   3'- -CCGGGuu-----CCG----------GGGUAUGuGCU---CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 23947 0.67 0.83842
Target:  5'- gGGCCUgggGGGGCCgCCGgagugguccGC-CGAGCGCg -3'
miRNA:   3'- -CCGGG---UUCCGG-GGUa--------UGuGCUCGUGg -5'
5993 5' -57.3 NC_001806.1 + 28154 0.67 0.83842
Target:  5'- cGGCCUGAGGgccgcCCCCA-GCGCGAGg--- -3'
miRNA:   3'- -CCGGGUUCC-----GGGGUaUGUGCUCgugg -5'
5993 5' -57.3 NC_001806.1 + 42568 0.67 0.83842
Target:  5'- aGGCCgCGuuGUCCCAgGgACGuGCGCCc -3'
miRNA:   3'- -CCGG-GUucCGGGGUaUgUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 83135 0.67 0.83842
Target:  5'- uGGCUCuuaacGAGGCUCUcUGCGCcGAGCuCCu -3'
miRNA:   3'- -CCGGG-----UUCCGGGGuAUGUG-CUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 150603 0.67 0.83842
Target:  5'- cGGCCCAuuGGGCgguaacucccgCCCAauggGC-CGGGCcCCg -3'
miRNA:   3'- -CCGGGU--UCCG-----------GGGUa---UGuGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 24733 0.67 0.83842
Target:  5'- cGCCCGc-GCCCU--GCugGAGC-CCg -3'
miRNA:   3'- cCGGGUucCGGGGuaUGugCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 100131 0.67 0.83842
Target:  5'- cGGUCCGcggcuauGGCCCCcaccaACGCGGcuaucuGCGCCu -3'
miRNA:   3'- -CCGGGUu------CCGGGGua---UGUGCU------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 24355 0.67 0.833529
Target:  5'- cGGCCCGGGGguCUucgcgcgcguggaggCCGcGCACGcGCGCCu -3'
miRNA:   3'- -CCGGGUUCC--GG---------------GGUaUGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 56256 0.67 0.830232
Target:  5'- cGCCaaccGGGCCCCGUcCcCGGGguCCu -3'
miRNA:   3'- cCGGgu--UCCGGGGUAuGuGCUCguGG- -5'
5993 5' -57.3 NC_001806.1 + 74532 0.67 0.830232
Target:  5'- cGGCCCuGGGCCagcagcuggaCAgcgACGCGGccuuuguuccuGCGCCc -3'
miRNA:   3'- -CCGGGuUCCGGg---------GUa--UGUGCU-----------CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 67429 0.67 0.830232
Target:  5'- gGGgUCAGcGCCCCAggggGCGCGucuGUGCCg -3'
miRNA:   3'- -CCgGGUUcCGGGGUa---UGUGCu--CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.