miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5993 5' -57.3 NC_001806.1 + 151538 0.67 0.795797
Target:  5'- cGCCCGuGGGCCCgGgcgGCcgggggcgGCGGGgGCCg -3'
miRNA:   3'- cCGGGU-UCCGGGgUa--UG--------UGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 150971 0.74 0.410774
Target:  5'- cGGCCCGcucgcGGGCCCaCGagcCGCGGcGCGCCa -3'
miRNA:   3'- -CCGGGU-----UCCGGG-GUau-GUGCU-CGUGG- -5'
5993 5' -57.3 NC_001806.1 + 150899 0.8 0.197033
Target:  5'- gGGCCUcGGGCCCCAgGCACG-GC-CCg -3'
miRNA:   3'- -CCGGGuUCCGGGGUaUGUGCuCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 150666 0.69 0.690883
Target:  5'- uGGCC--GGGCCCCGccGCGCuGGCgGCCg -3'
miRNA:   3'- -CCGGguUCCGGGGUa-UGUGcUCG-UGG- -5'
5993 5' -57.3 NC_001806.1 + 150603 0.67 0.83842
Target:  5'- cGGCCCAuuGGGCgguaacucccgCCCAauggGC-CGGGCcCCg -3'
miRNA:   3'- -CCGGGU--UCCG-----------GGGUa---UGuGCUCGuGG- -5'
5993 5' -57.3 NC_001806.1 + 150169 0.7 0.650681
Target:  5'- cGGCCC--GGCCCCcgAUuuGGGgGCCc -3'
miRNA:   3'- -CCGGGuuCCGGGGuaUGugCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 150099 0.73 0.48267
Target:  5'- aGGCCCAccgcggggcGGCCCCGUcCcCGGGgACCa -3'
miRNA:   3'- -CCGGGUu--------CCGGGGUAuGuGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 149751 0.69 0.700836
Target:  5'- cGCCCcccaauauGGcGCCCCAgACAUG-GCGCCc -3'
miRNA:   3'- cCGGGu-------UC-CGGGGUaUGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 149713 0.69 0.690883
Target:  5'- gGGUCgGGGGUCCCccaACAUG-GCGCCc -3'
miRNA:   3'- -CCGGgUUCCGGGGua-UGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 149628 0.67 0.813336
Target:  5'- cGCCCccuaacauGGcGCCCCA-ACAUG-GCGCCc -3'
miRNA:   3'- cCGGGu-------UC-CGGGGUaUGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 148080 0.68 0.749576
Target:  5'- uGGCCCGauGGGCgCCG-AgGgGGGCGCUg -3'
miRNA:   3'- -CCGGGU--UCCGgGGUaUgUgCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 147985 0.66 0.854239
Target:  5'- gGGCCaGAcGCCCCc--CGCG-GCGCCg -3'
miRNA:   3'- -CCGGgUUcCGGGGuauGUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 147913 0.67 0.813336
Target:  5'- gGGCCCGuccGGCCCCucgGC-CGcccCGCCu -3'
miRNA:   3'- -CCGGGUu--CCGGGGua-UGuGCuc-GUGG- -5'
5993 5' -57.3 NC_001806.1 + 147786 0.76 0.316344
Target:  5'- gGGCCCGGGGCggggggcggagCCUG-GCAUGGGCGCCg -3'
miRNA:   3'- -CCGGGUUCCG-----------GGGUaUGUGCUCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 147687 0.67 0.813336
Target:  5'- gGGCCgGggcgcgggggcGGGCCCCGgAgGCG-GCGCUc -3'
miRNA:   3'- -CCGGgU-----------UCCGGGGUaUgUGCuCGUGG- -5'
5993 5' -57.3 NC_001806.1 + 147364 0.69 0.710732
Target:  5'- cGCCCucuuGGCCCCugccgGCGCGAGgGg- -3'
miRNA:   3'- cCGGGuu--CCGGGGua---UGUGCUCgUgg -5'
5993 5' -57.3 NC_001806.1 + 147100 0.73 0.501588
Target:  5'- cGGCCCccgcGGCCCagaagcaGCGCGGGgGCCg -3'
miRNA:   3'- -CCGGGuu--CCGGGgua----UGUGCUCgUGG- -5'
5993 5' -57.3 NC_001806.1 + 145719 0.68 0.777681
Target:  5'- cGGCCCAccuGGCCgCGcgggUGCGCGugccuuuGCACa -3'
miRNA:   3'- -CCGGGUu--CCGGgGU----AUGUGCu------CGUGg -5'
5993 5' -57.3 NC_001806.1 + 145007 0.8 0.20193
Target:  5'- cGGCCCGGGGCCCCAca-ACGgcccGGCGCa -3'
miRNA:   3'- -CCGGGUUCCGGGGUaugUGC----UCGUGg -5'
5993 5' -57.3 NC_001806.1 + 144975 0.75 0.361419
Target:  5'- cGGCCCGGGGCCCCGgcggACccaAgGGGC-CCn -3'
miRNA:   3'- -CCGGGUUCCGGGGUa---UG---UgCUCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.