miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 3' -57.1 NC_001806.1 + 94229 0.72 0.492503
Target:  5'- cCCCGC-UGUCggUCACCCUGGAGUUg-- -3'
miRNA:   3'- -GGGCGuAUAG--GGUGGGACCUCGAguu -5'
5994 3' -57.1 NC_001806.1 + 98798 0.72 0.511866
Target:  5'- aCCCGUAa---CCACCaaGGAGCUCAAg -3'
miRNA:   3'- -GGGCGUauagGGUGGgaCCUCGAGUU- -5'
5994 3' -57.1 NC_001806.1 + 22669 0.72 0.521665
Target:  5'- gCCGCGgggAUCCUcgccGCCCUGGGGCg--- -3'
miRNA:   3'- gGGCGUa--UAGGG----UGGGACCUCGaguu -5'
5994 3' -57.1 NC_001806.1 + 51738 0.7 0.62266
Target:  5'- gCUGCGg--CCCACCCUGGcGC-CAAa -3'
miRNA:   3'- gGGCGUauaGGGUGGGACCuCGaGUU- -5'
5994 3' -57.1 NC_001806.1 + 17856 0.7 0.653421
Target:  5'- cCCCGCGgccCCCAaccaccCCCUGGAgacccuGCUCAGc -3'
miRNA:   3'- -GGGCGUauaGGGU------GGGACCU------CGAGUU- -5'
5994 3' -57.1 NC_001806.1 + 24345 0.69 0.663652
Target:  5'- gCCGCGUGUUCgGCCCgGGGGUcuUCGc -3'
miRNA:   3'- gGGCGUAUAGGgUGGGaCCUCG--AGUu -5'
5994 3' -57.1 NC_001806.1 + 23588 0.69 0.673857
Target:  5'- gCCCGCGgccgCCGCCCUGGAggccuacuGCUCc- -3'
miRNA:   3'- -GGGCGUauagGGUGGGACCU--------CGAGuu -5'
5994 3' -57.1 NC_001806.1 + 131958 0.69 0.694156
Target:  5'- -aCGCGUgcGUCCUggcgGCCCUGGAGCg--- -3'
miRNA:   3'- ggGCGUA--UAGGG----UGGGACCUCGaguu -5'
5994 3' -57.1 NC_001806.1 + 93892 0.69 0.704232
Target:  5'- gCCCGCGggaggccgCCCcgaagagggggACCCcGGGGCUCAGc -3'
miRNA:   3'- -GGGCGUaua-----GGG-----------UGGGaCCUCGAGUU- -5'
5994 3' -57.1 NC_001806.1 + 54112 0.69 0.713248
Target:  5'- gCCCGCAUgggggguGUCCCgggGCCCaGGGGC-CGGu -3'
miRNA:   3'- -GGGCGUA-------UAGGG---UGGGaCCUCGaGUU- -5'
5994 3' -57.1 NC_001806.1 + 77703 0.69 0.714247
Target:  5'- cCCCGCu--UCCgacggaCACCCUGGAGUcggccUCGAc -3'
miRNA:   3'- -GGGCGuauAGG------GUGGGACCUCG-----AGUU- -5'
5994 3' -57.1 NC_001806.1 + 57967 0.68 0.724191
Target:  5'- cCCCGCcucUCCCGCCCgGGcAGCgccaUCGAg -3'
miRNA:   3'- -GGGCGuauAGGGUGGGaCC-UCG----AGUU- -5'
5994 3' -57.1 NC_001806.1 + 120794 0.68 0.724191
Target:  5'- cCCCGCGccguUGgccCCCGCCuCUGGGGUUUg- -3'
miRNA:   3'- -GGGCGU----AUa--GGGUGG-GACCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 106673 0.68 0.734056
Target:  5'- cCCCGCGgacgaaaaCCC-CCCgGGGGCUCu- -3'
miRNA:   3'- -GGGCGUaua-----GGGuGGGaCCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 135672 0.68 0.753509
Target:  5'- gCCCGCGUugGUCUCGCgCaGGcGCUCGAu -3'
miRNA:   3'- -GGGCGUA--UAGGGUGgGaCCuCGAGUU- -5'
5994 3' -57.1 NC_001806.1 + 128696 0.68 0.76308
Target:  5'- cCCCGCGca-CCUcgGCCgUGGAGUUCAc -3'
miRNA:   3'- -GGGCGUauaGGG--UGGgACCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 137230 0.67 0.772533
Target:  5'- cCCCGCAgg-CCUGCCCcucagGGAGUUUc- -3'
miRNA:   3'- -GGGCGUauaGGGUGGGa----CCUCGAGuu -5'
5994 3' -57.1 NC_001806.1 + 135618 0.67 0.772533
Target:  5'- cCCCGC-UGUUgCGCgCC-GGAGCUCGc -3'
miRNA:   3'- -GGGCGuAUAGgGUG-GGaCCUCGAGUu -5'
5994 3' -57.1 NC_001806.1 + 119299 0.67 0.781861
Target:  5'- gCCCGCAga-CCCGCCCaucgucGGGGCgucCGAc -3'
miRNA:   3'- -GGGCGUauaGGGUGGGa-----CCUCGa--GUU- -5'
5994 3' -57.1 NC_001806.1 + 28118 0.67 0.800102
Target:  5'- aCCCcCAUGgagcCCCGCCCcGGAGCg--- -3'
miRNA:   3'- -GGGcGUAUa---GGGUGGGaCCUCGaguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.