Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 27638 | 0.67 | 0.808998 |
|
Target: 5'- aCCCGCAUuggUC-CCCUGGGGUUCc- -3' miRNA: 3'- -GGGCGUAuagGGuGGGACCUCGAGuu -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 23129 | 0.67 | 0.817734 |
|
Target: 5'- gCCGCGggaCCCGCgCCUGccGAGCUCc- -3' miRNA: 3'- gGGCGUauaGGGUG-GGAC--CUCGAGuu -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 73352 | 0.66 | 0.826299 |
|
Target: 5'- gUCGcCGUAUCCgGCCucuccggggcugCUGGAGCUCu- -3' miRNA: 3'- gGGC-GUAUAGGgUGG------------GACCUCGAGuu -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 20299 | 0.66 | 0.827992 |
|
Target: 5'- cCCCGCccccuuggggcgGUCCCGCCCgccggccaaugggGGGGCggCAAg -3' miRNA: 3'- -GGGCGua----------UAGGGUGGGa------------CCUCGa-GUU- -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 89902 | 0.66 | 0.834688 |
|
Target: 5'- cCCCGCGUugCCgGCCgCcGGGGUUCAu -3' miRNA: 3'- -GGGCGUAuaGGgUGG-GaCCUCGAGUu -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 40930 | 0.66 | 0.842891 |
|
Target: 5'- uUCGCGagGUUCCGCCgUGGGGC-CGAc -3' miRNA: 3'- gGGCGUa-UAGGGUGGgACCUCGaGUU- -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 82572 | 0.66 | 0.842891 |
|
Target: 5'- gCCCGCGUAaaCCCACCaaaGGGUUCGc -3' miRNA: 3'- -GGGCGUAUa-GGGUGGgacCUCGAGUu -5' |
|||||||
| 5994 | 3' | -57.1 | NC_001806.1 | + | 78936 | 0.66 | 0.850902 |
|
Target: 5'- gCCCGgGg--CCCGCCguguCUGGuGCUCGu -3' miRNA: 3'- -GGGCgUauaGGGUGG----GACCuCGAGUu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home