miRNA display CGI


Results 41 - 60 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 151109 0.67 0.795853
Target:  5'- ---cGgGGGUCgCGGGGGGCuccgGCGCc- -3'
miRNA:   3'- aaaaCgCCCAG-GUCUCCCGu---UGCGcc -5'
5994 5' -56.8 NC_001806.1 + 55074 0.67 0.795853
Target:  5'- ---cGUGGGgCUGGAGGGUcagaGACGgGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUCCCG----UUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 32010 0.67 0.795853
Target:  5'- ---cGUGGGUgUUGGGGGGUGGgGCGGa -3'
miRNA:   3'- aaaaCGCCCA-GGUCUCCCGUUgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 99449 0.67 0.795853
Target:  5'- ---aGCGGGcCCccaucaucugAGAGacgaacaaaucGGCGGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaGG----------UCUC-----------CCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 21762 0.68 0.786755
Target:  5'- ---cGCGGG-CCGucGGGCGggguccgucgaGCGCGGc -3'
miRNA:   3'- aaaaCGCCCaGGUcuCCCGU-----------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 10405 0.68 0.777517
Target:  5'- ---gGCGGGagCCGGGGGGUcccGCugGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GGUCUCCCGu--UG--CGCC- -5'
5994 5' -56.8 NC_001806.1 + 41679 0.68 0.777517
Target:  5'- ---cGCaGGUCUGuGGGGGCGGCGUGc -3'
miRNA:   3'- aaaaCGcCCAGGU-CUCCCGUUGCGCc -5'
5994 5' -56.8 NC_001806.1 + 34298 0.68 0.777517
Target:  5'- --aUG-GGGUUuagcggCGGGGGGCGGCGCGc -3'
miRNA:   3'- aaaACgCCCAG------GUCUCCCGUUGCGCc -5'
5994 5' -56.8 NC_001806.1 + 72858 0.68 0.758661
Target:  5'- --aUGCGGGUCCuggAGAuGGGCGuCGUcccGGu -3'
miRNA:   3'- aaaACGCCCAGG---UCU-CCCGUuGCG---CC- -5'
5994 5' -56.8 NC_001806.1 + 69562 0.68 0.758661
Target:  5'- ---gGCGGGUCCAGGGcGCca-GCGa -3'
miRNA:   3'- aaaaCGCCCAGGUCUCcCGuugCGCc -5'
5994 5' -56.8 NC_001806.1 + 83265 0.68 0.758661
Target:  5'- ---gGCGGGcgaCGGAGGGgGuucgggcggGCGCGGa -3'
miRNA:   3'- aaaaCGCCCag-GUCUCCCgU---------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 62242 0.68 0.758661
Target:  5'- ---aGCGGGgg-AGAGGGCuggggcCGCGGa -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGuu----GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 2568 0.68 0.74906
Target:  5'- ---cGCGGGUCaaacauGAGGGCcggucgccagggGACGgGGa -3'
miRNA:   3'- aaaaCGCCCAGgu----CUCCCG------------UUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 50652 0.69 0.739357
Target:  5'- --gUGCGGGgacgcgcaCCGGcgccGGGaCGACGCGGc -3'
miRNA:   3'- aaaACGCCCa-------GGUCu---CCC-GUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 98031 0.69 0.739357
Target:  5'- ---cGUGGG-CCGGcGGGUGagcGCGCGGa -3'
miRNA:   3'- aaaaCGCCCaGGUCuCCCGU---UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 83884 0.69 0.739357
Target:  5'- -aUUGCGcccGUCUccuggacugcacGGAGGGuCGGCGCGGg -3'
miRNA:   3'- aaAACGCc--CAGG------------UCUCCC-GUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 82720 0.69 0.738382
Target:  5'- ---cGCGGuGUCCGGggucugcGGGGCGGCgGCGu -3'
miRNA:   3'- aaaaCGCC-CAGGUC-------UCCCGUUG-CGCc -5'
5994 5' -56.8 NC_001806.1 + 148190 0.69 0.72956
Target:  5'- ---cGCGGGgcgUCCggcGGGGGGCGG-GCGGu -3'
miRNA:   3'- aaaaCGCCC---AGG---UCUCCCGUUgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 128533 0.69 0.728576
Target:  5'- --aUGCGGGccgcagCCAGAcGGCGgcccgcguccaggGCGCGGu -3'
miRNA:   3'- aaaACGCCCa-----GGUCUcCCGU-------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 149839 0.69 0.719679
Target:  5'- ---gGCGGGgcUCCAuGGGGGUcguAUGCGGc -3'
miRNA:   3'- aaaaCGCCC--AGGU-CUCCCGu--UGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.