miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 103918 0.66 0.854938
Target:  5'- --cUGCGGGacgagCCGGGucacGcGGCuGACGCGGa -3'
miRNA:   3'- aaaACGCCCa----GGUCU----C-CCG-UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 86073 0.66 0.853375
Target:  5'- ---gGCGGcGUCUagcucgcGGAGGGCGgccagccGCGCGa -3'
miRNA:   3'- aaaaCGCC-CAGG-------UCUCCCGU-------UGCGCc -5'
5994 5' -56.8 NC_001806.1 + 146067 0.66 0.850226
Target:  5'- ---gGCGGccagaggccaggucaGUCCGGGcGGGCAGgcgcuCGCGGa -3'
miRNA:   3'- aaaaCGCC---------------CAGGUCU-CCCGUU-----GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 25406 0.66 0.850226
Target:  5'- ---gGCGGG---AGGGGGCGaggggcgguggugguGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGU---------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 85962 0.66 0.847844
Target:  5'- -cUUGCGGGgcuuggacgcgccucCCGGGGGGUcggcaGGCGaCGGc -3'
miRNA:   3'- aaAACGCCCa--------------GGUCUCCCG-----UUGC-GCC- -5'
5994 5' -56.8 NC_001806.1 + 6412 0.66 0.847046
Target:  5'- ---gGCGGaGg--AGGGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCC-CaggUCUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 22916 0.67 0.838958
Target:  5'- ---cGCGG--CCGGAGGGaccCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGGUCUCCCguuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 1508 0.67 0.838958
Target:  5'- ---cGuCGGGcUCCAGcAGGGCGcggGCGCa- -3'
miRNA:   3'- aaaaC-GCCC-AGGUC-UCCCGU---UGCGcc -5'
5994 5' -56.8 NC_001806.1 + 4340 0.67 0.830682
Target:  5'- ---cGCGGGcCCGGcGGcGCucGAUGCGGc -3'
miRNA:   3'- aaaaCGCCCaGGUCuCC-CG--UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 72510 0.67 0.830682
Target:  5'- ---cGCGGG-CCuGGGGGagcccugcguCGGCGUGGg -3'
miRNA:   3'- aaaaCGCCCaGGuCUCCC----------GUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 99576 0.67 0.830682
Target:  5'- ---gGUGGcGg-CGGGGGGgAACGCGGg -3'
miRNA:   3'- aaaaCGCC-CagGUCUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 127753 0.67 0.830682
Target:  5'- ---gGCGGGcugCCGGGugcGGGCcuGugGCGGc -3'
miRNA:   3'- aaaaCGCCCa--GGUCU---CCCG--UugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 147702 0.67 0.822226
Target:  5'- ---gGCGGGccCCGGA-GGCGGCGCu- -3'
miRNA:   3'- aaaaCGCCCa-GGUCUcCCGUUGCGcc -5'
5994 5' -56.8 NC_001806.1 + 6082 0.67 0.813597
Target:  5'- ---gGCGGGcCCGGGcGGCGggGgGCGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUcCCGU--UgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33649 0.67 0.813597
Target:  5'- ---gGCGGGg--GGGGGGUGuCGCGGg -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGUuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 65776 0.67 0.813597
Target:  5'- ---gGCGGGcUCgAGAGGG-GACGuCGGc -3'
miRNA:   3'- aaaaCGCCC-AGgUCUCCCgUUGC-GCC- -5'
5994 5' -56.8 NC_001806.1 + 145645 0.67 0.813597
Target:  5'- ---gGCGGGUgCCGGgggaccGGGGUGaucucuggcACGCGGg -3'
miRNA:   3'- aaaaCGCCCA-GGUC------UCCCGU---------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 37975 0.67 0.804803
Target:  5'- -gUUGCGauuGGUUCuGGGGGCAcgccgGCGgGGg -3'
miRNA:   3'- aaAACGC---CCAGGuCUCCCGU-----UGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 16862 0.67 0.804803
Target:  5'- gUUUGgGGGUCUccGGGGGCGgggaguccaggcACGCGu -3'
miRNA:   3'- aAAACgCCCAGGu-CUCCCGU------------UGCGCc -5'
5994 5' -56.8 NC_001806.1 + 52697 0.67 0.804803
Target:  5'- ---cGCGuccacccggaGGuUCCGGAGGcGCcGCGCGGa -3'
miRNA:   3'- aaaaCGC----------CC-AGGUCUCC-CGuUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.