miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 21288 0.72 0.547282
Target:  5'- ---gGCGGGaCgGGAGGGCcccCGCGGc -3'
miRNA:   3'- aaaaCGCCCaGgUCUCCCGuu-GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 52584 0.72 0.557293
Target:  5'- ---aGCGGccCgGGGGGGCAucGCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGgUCUCCCGU--UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 15696 0.72 0.557293
Target:  5'- ---aGCGGGUCCAGGccggucGGGUGuACgGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGUCU------CCCGU-UG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 2852 0.72 0.557293
Target:  5'- ---cGCGGGcgCgGgGAGGGgGGCGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GgU-CUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 41501 0.72 0.566347
Target:  5'- --aUGCGGGcCCAGucgucccAGGcCAGCGCGGc -3'
miRNA:   3'- aaaACGCCCaGGUC-------UCCcGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 20400 0.72 0.571394
Target:  5'- ---gGCGGGaCCGGGGGGCccggggacggccaacGggcGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUCCCG---------------U---UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 75519 0.71 0.577463
Target:  5'- ---cGCGGG-CCAcGAGGGCAGguuCGgGGg -3'
miRNA:   3'- aaaaCGCCCaGGU-CUCCCGUU---GCgCC- -5'
5994 5' -56.8 NC_001806.1 + 147491 0.71 0.577463
Target:  5'- ---aGCGGGgcggcgCCGGAggGGGCGGCgccGCGGg -3'
miRNA:   3'- aaaaCGCCCa-----GGUCU--CCCGUUG---CGCC- -5'
5994 5' -56.8 NC_001806.1 + 151542 0.71 0.586594
Target:  5'- ---cGUGGGcCCGGgcggccgGGGGCGGCGgGGg -3'
miRNA:   3'- aaaaCGCCCaGGUC-------UCCCGUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 76543 0.71 0.58761
Target:  5'- ---aGCGGGUCaCGGcGGGGC--UGCGGg -3'
miRNA:   3'- aaaaCGCCCAG-GUC-UCCCGuuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6451 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6539 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6495 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 51367 0.71 0.604931
Target:  5'- ---gGCGGGUgucugcuccccaccCCGGAGGGgcuccuUAGCGCGGc -3'
miRNA:   3'- aaaaCGCCCA--------------GGUCUCCC------GUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33826 0.71 0.618217
Target:  5'- ---cGCGGGgggCCGGAGGGUggAAgGCaGGg -3'
miRNA:   3'- aaaaCGCCCa--GGUCUCCCG--UUgCG-CC- -5'
5994 5' -56.8 NC_001806.1 + 33977 0.7 0.625379
Target:  5'- --gUGCGGG-CCGGgggucgccggggcaGGGGCGgggGCGUGGg -3'
miRNA:   3'- aaaACGCCCaGGUC--------------UCCCGU---UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 142006 0.7 0.62845
Target:  5'- ---aGCGGGaCCAGccucuAGGGCGGCGaGGa -3'
miRNA:   3'- aaaaCGCCCaGGUC-----UCCCGUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 119552 0.7 0.62845
Target:  5'- ---aGCGGGggcgCCAuGGGGGCGGCugacgcagauGCGGu -3'
miRNA:   3'- aaaaCGCCCa---GGU-CUCCCGUUG----------CGCC- -5'
5994 5' -56.8 NC_001806.1 + 146788 0.7 0.62845
Target:  5'- ---cGuCGGGUacUCGGGGGGCAucACGUGGu -3'
miRNA:   3'- aaaaC-GCCCA--GGUCUCCCGU--UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 113167 0.7 0.62845
Target:  5'- ---gGCGGGUCCGauGGGU--CGCGGa -3'
miRNA:   3'- aaaaCGCCCAGGUcuCCCGuuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.