miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 95430 0.8 0.207814
Target:  5'- ---cGCGGGcCCGGGGGGCAggggcccgagACGUGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUCCCGU----------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 3122 0.78 0.258629
Target:  5'- ---cGCGGGUCCcGc-GGCAGCGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGuCucCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 4820 0.77 0.284294
Target:  5'- ---cGgGGGUCCGGGGcGGCGAggcCGCGGg -3'
miRNA:   3'- aaaaCgCCCAGGUCUC-CCGUU---GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 127938 0.76 0.31915
Target:  5'- ---gGCGGcGaCCAgggcGAGGGCGACGCGGa -3'
miRNA:   3'- aaaaCGCC-CaGGU----CUCCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 64027 0.76 0.326495
Target:  5'- -gUUGCGGGUCCccAGGuucaGCAugGCGGg -3'
miRNA:   3'- aaAACGCCCAGGucUCC----CGUugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 67989 0.76 0.349277
Target:  5'- ---cGgGGGUCCuGGAGGGCcGCGgGGg -3'
miRNA:   3'- aaaaCgCCCAGG-UCUCCCGuUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 151279 0.75 0.373169
Target:  5'- ---gGUGGGggccggggCCGGGGGGCGGCgGCGGu -3'
miRNA:   3'- aaaaCGCCCa-------GGUCUCCCGUUG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 143248 0.75 0.388864
Target:  5'- --gUGCGGGUUgGGGGGGgAugugggcggggguGCGCGGg -3'
miRNA:   3'- aaaACGCCCAGgUCUCCCgU-------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33111 0.75 0.398146
Target:  5'- ---aGCGGGUCCGGAcgGGGCccggaccgcCGCGGu -3'
miRNA:   3'- aaaaCGCCCAGGUCU--CCCGuu-------GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 2640 0.74 0.424171
Target:  5'- ---cGCGGGgagcaguaggccUCCAGGGcGGCGGcCGCGGg -3'
miRNA:   3'- aaaaCGCCC------------AGGUCUC-CCGUU-GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 92908 0.74 0.442075
Target:  5'- ---cGCGuGGUCCGcGcAGGGCGGgGCGGg -3'
miRNA:   3'- aaaaCGC-CCAGGU-C-UCCCGUUgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 3331 0.74 0.451186
Target:  5'- ---cGCGGGUCCcuccggccgcGGGGGGCug-GCGGg -3'
miRNA:   3'- aaaaCGCCCAGG----------UCUCCCGuugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 151429 0.73 0.5069
Target:  5'- ---gGCGGGggCCcaccggcGGGGGGCGGCgGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GG-------UCUCCCGUUG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 147756 0.72 0.517618
Target:  5'- ---cGCGGGUCCcGAcGcGGCcgcgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGuCU-C-CCG----UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 51027 0.72 0.517618
Target:  5'- ---gGCGGGUCCGuguuGGGCc-CGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGUcu--CCCGuuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 46139 0.72 0.537329
Target:  5'- ---cGCuGGGUCCGGAGGGgCcgGACGCa- -3'
miRNA:   3'- aaaaCG-CCCAGGUCUCCC-G--UUGCGcc -5'
5994 5' -56.8 NC_001806.1 + 25939 0.72 0.537329
Target:  5'- ---gGCGGG-CguGGGGGCGGggcCGCGGg -3'
miRNA:   3'- aaaaCGCCCaGguCUCCCGUU---GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 74323 0.72 0.537329
Target:  5'- -gUUGCGGGaucugaUCCAGcGGGGCcaGACGCuGGa -3'
miRNA:   3'- aaAACGCCC------AGGUC-UCCCG--UUGCG-CC- -5'
5994 5' -56.8 NC_001806.1 + 95300 0.72 0.537329
Target:  5'- ---gGCGGGgggCgCGGcggacgcgcccaAGGGCGGCGCGGg -3'
miRNA:   3'- aaaaCGCCCa--G-GUC------------UCCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 21288 0.72 0.547282
Target:  5'- ---gGCGGGaCgGGAGGGCcccCGCGGc -3'
miRNA:   3'- aaaaCGCCCaGgUCUCCCGuu-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.