miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 1508 0.67 0.838958
Target:  5'- ---cGuCGGGcUCCAGcAGGGCGcggGCGCa- -3'
miRNA:   3'- aaaaC-GCCC-AGGUC-UCCCGU---UGCGcc -5'
5994 5' -56.8 NC_001806.1 + 2568 0.68 0.74906
Target:  5'- ---cGCGGGUCaaacauGAGGGCcggucgccagggGACGgGGa -3'
miRNA:   3'- aaaaCGCCCAGgu----CUCCCG------------UUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 2640 0.74 0.424171
Target:  5'- ---cGCGGGgagcaguaggccUCCAGGGcGGCGGcCGCGGg -3'
miRNA:   3'- aaaaCGCCC------------AGGUCUC-CCGUU-GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 2852 0.72 0.557293
Target:  5'- ---cGCGGGcgCgGgGAGGGgGGCGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GgU-CUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 3122 0.78 0.258629
Target:  5'- ---cGCGGGUCCcGc-GGCAGCGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGuCucCCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 3331 0.74 0.451186
Target:  5'- ---cGCGGGUCCcuccggccgcGGGGGGCug-GCGGg -3'
miRNA:   3'- aaaaCGCCCAGG----------UCUCCCGuugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 4340 0.67 0.830682
Target:  5'- ---cGCGGGcCCGGcGGcGCucGAUGCGGc -3'
miRNA:   3'- aaaaCGCCCaGGUCuCC-CG--UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 4820 0.77 0.284294
Target:  5'- ---cGgGGGUCCGGGGcGGCGAggcCGCGGg -3'
miRNA:   3'- aaaaCgCCCAGGUCUC-CCGUU---GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6082 0.67 0.813597
Target:  5'- ---gGCGGGcCCGGGcGGCGggGgGCGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUcCCGU--UgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6202 0.69 0.689622
Target:  5'- ---aGCGGGagUCgCAGAGGGCcgucggaGCGGa -3'
miRNA:   3'- aaaaCGCCC--AG-GUCUCCCGuug----CGCC- -5'
5994 5' -56.8 NC_001806.1 + 6412 0.66 0.847046
Target:  5'- ---gGCGGaGg--AGGGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCC-CaggUCUCCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6451 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6495 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 6539 0.71 0.59779
Target:  5'- ---cGCGGGggCGGAggagGGGgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCagGUCU----CCCgUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 9199 0.66 0.870112
Target:  5'- ---cGCGGGUgUggcGAGGGCGcggucgACGUGGc -3'
miRNA:   3'- aaaaCGCCCAgGu--CUCCCGU------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 9765 0.66 0.862629
Target:  5'- ---cGUGGGUU--GGGGGCG-CGUGGg -3'
miRNA:   3'- aaaaCGCCCAGguCUCCCGUuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 10405 0.68 0.777517
Target:  5'- ---gGCGGGagCCGGGGGGUcccGCugGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GGUCUCCCGu--UG--CGCC- -5'
5994 5' -56.8 NC_001806.1 + 15696 0.72 0.557293
Target:  5'- ---aGCGGGUCCAGGccggucGGGUGuACgGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGUCU------CCCGU-UG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 16278 0.7 0.638686
Target:  5'- --aUGCaGGUCCAGgaGGGGCAGgauCGcCGGg -3'
miRNA:   3'- aaaACGcCCAGGUC--UCCCGUU---GC-GCC- -5'
5994 5' -56.8 NC_001806.1 + 16862 0.67 0.804803
Target:  5'- gUUUGgGGGUCUccGGGGGCGgggaguccaggcACGCGu -3'
miRNA:   3'- aAAACgCCCAGGu-CUCCCGU------------UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.