miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 20400 0.72 0.571394
Target:  5'- ---gGCGGGaCCGGGGGGCccggggacggccaacGggcGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaGGUCUCCCG---------------U---UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 21288 0.72 0.547282
Target:  5'- ---gGCGGGaCgGGAGGGCcccCGCGGc -3'
miRNA:   3'- aaaaCGCCCaGgUCUCCCGuu-GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 21762 0.68 0.786755
Target:  5'- ---cGCGGG-CCGucGGGCGggguccgucgaGCGCGGc -3'
miRNA:   3'- aaaaCGCCCaGGUcuCCCGU-----------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 22916 0.67 0.838958
Target:  5'- ---cGCGG--CCGGAGGGaccCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGGUCUCCCguuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 23951 0.66 0.854938
Target:  5'- --cUGgGGGggccgCCGGAGuGGUccgccgAGCGCGGc -3'
miRNA:   3'- aaaACgCCCa----GGUCUC-CCG------UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 24877 0.66 0.862629
Target:  5'- ---gGCGGGggCCGuggaggugcuGGGGGCGGagGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GGU----------CUCCCGUUg-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 25406 0.66 0.850226
Target:  5'- ---gGCGGG---AGGGGGCGaggggcgguggugguGCGCGGg -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGU---------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 25939 0.72 0.537329
Target:  5'- ---gGCGGG-CguGGGGGCGGggcCGCGGg -3'
miRNA:   3'- aaaaCGCCCaGguCUCCCGUU---GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 26704 0.72 0.547282
Target:  5'- ---cGUGGGcCCGGGGGGCGGgGCu- -3'
miRNA:   3'- aaaaCGCCCaGGUCUCCCGUUgCGcc -5'
5994 5' -56.8 NC_001806.1 + 30409 0.7 0.659134
Target:  5'- ---cGCGGcUCgGGGGGGCcgGGCGUGGa -3'
miRNA:   3'- aaaaCGCCcAGgUCUCCCG--UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 30594 0.66 0.87738
Target:  5'- ---gGCaGGGgCCaAGAGGGCGGCGaCGc -3'
miRNA:   3'- aaaaCG-CCCaGG-UCUCCCGUUGC-GCc -5'
5994 5' -56.8 NC_001806.1 + 32010 0.67 0.795853
Target:  5'- ---cGUGGGUgUUGGGGGGUGGgGCGGa -3'
miRNA:   3'- aaaaCGCCCA-GGUCUCCCGUUgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33111 0.75 0.398146
Target:  5'- ---aGCGGGUCCGGAcgGGGCccggaccgcCGCGGu -3'
miRNA:   3'- aaaaCGCCCAGGUCU--CCCGuu-------GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33649 0.67 0.813597
Target:  5'- ---gGCGGGg--GGGGGGUGuCGCGGg -3'
miRNA:   3'- aaaaCGCCCaggUCUCCCGUuGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 33826 0.71 0.618217
Target:  5'- ---cGCGGGgggCCGGAGGGUggAAgGCaGGg -3'
miRNA:   3'- aaaaCGCCCa--GGUCUCCCG--UUgCG-CC- -5'
5994 5' -56.8 NC_001806.1 + 33977 0.7 0.625379
Target:  5'- --gUGCGGG-CCGGgggucgccggggcaGGGGCGgggGCGUGGg -3'
miRNA:   3'- aaaACGCCCaGGUC--------------UCCCGU---UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 34298 0.68 0.777517
Target:  5'- --aUG-GGGUUuagcggCGGGGGGCGGCGCGc -3'
miRNA:   3'- aaaACgCCCAG------GUCUCCCGUUGCGCc -5'
5994 5' -56.8 NC_001806.1 + 37356 0.7 0.659134
Target:  5'- --aUG-GGGUCCuGGGGGCGcaGCGGc -3'
miRNA:   3'- aaaACgCCCAGGuCUCCCGUugCGCC- -5'
5994 5' -56.8 NC_001806.1 + 37808 0.7 0.635615
Target:  5'- ---cGCGGG-CgGGGGGGCAAUcgccagcgucauuaGCGGg -3'
miRNA:   3'- aaaaCGCCCaGgUCUCCCGUUG--------------CGCC- -5'
5994 5' -56.8 NC_001806.1 + 37975 0.67 0.804803
Target:  5'- -gUUGCGauuGGUUCuGGGGGCAcgccgGCGgGGg -3'
miRNA:   3'- aaAACGC---CCAGGuCUCCCGU-----UGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.