miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5994 5' -56.8 NC_001806.1 + 151542 0.71 0.586594
Target:  5'- ---cGUGGGcCCGGgcggccgGGGGCGGCGgGGg -3'
miRNA:   3'- aaaaCGCCCaGGUC-------UCCCGUUGCgCC- -5'
5994 5' -56.8 NC_001806.1 + 151429 0.73 0.5069
Target:  5'- ---gGCGGGggCCcaccggcGGGGGGCGGCgGCGGg -3'
miRNA:   3'- aaaaCGCCCa-GG-------UCUCCCGUUG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 151279 0.75 0.373169
Target:  5'- ---gGUGGGggccggggCCGGGGGGCGGCgGCGGu -3'
miRNA:   3'- aaaaCGCCCa-------GGUCUCCCGUUG-CGCC- -5'
5994 5' -56.8 NC_001806.1 + 151109 0.67 0.795853
Target:  5'- ---cGgGGGUCgCGGGGGGCuccgGCGCc- -3'
miRNA:   3'- aaaaCgCCCAG-GUCUCCCGu---UGCGcc -5'
5994 5' -56.8 NC_001806.1 + 150476 0.66 0.870112
Target:  5'- ---cGCGGGaauugCCGGAagcgggaaGGGCGGC-CGGg -3'
miRNA:   3'- aaaaCGCCCa----GGUCU--------CCCGUUGcGCC- -5'
5994 5' -56.8 NC_001806.1 + 150331 0.66 0.87738
Target:  5'- --aUGCGGGUUCAuuGaGCGAccCGCGGg -3'
miRNA:   3'- aaaACGCCCAGGUcuCcCGUU--GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 149839 0.69 0.719679
Target:  5'- ---gGCGGGgcUCCAuGGGGGUcguAUGCGGc -3'
miRNA:   3'- aaaaCGCCC--AGGU-CUCCCGu--UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 148532 0.66 0.884431
Target:  5'- --aUGCGGGUCUGGGGGuCGuucACGauCGGg -3'
miRNA:   3'- aaaACGCCCAGGUCUCCcGU---UGC--GCC- -5'
5994 5' -56.8 NC_001806.1 + 148190 0.69 0.72956
Target:  5'- ---cGCGGGgcgUCCggcGGGGGGCGG-GCGGu -3'
miRNA:   3'- aaaaCGCCC---AGG---UCUCCCGUUgCGCC- -5'
5994 5' -56.8 NC_001806.1 + 147756 0.72 0.517618
Target:  5'- ---cGCGGGUCCcGAcGcGGCcgcgGACGCGGg -3'
miRNA:   3'- aaaaCGCCCAGGuCU-C-CCG----UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 147702 0.67 0.822226
Target:  5'- ---gGCGGGccCCGGA-GGCGGCGCu- -3'
miRNA:   3'- aaaaCGCCCa-GGUCUcCCGUUGCGcc -5'
5994 5' -56.8 NC_001806.1 + 147663 0.69 0.709723
Target:  5'- ---gGCGGGcggCCGGcuccgccccgGGGGCcggGGCGCGGg -3'
miRNA:   3'- aaaaCGCCCa--GGUC----------UCCCG---UUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 147491 0.71 0.577463
Target:  5'- ---aGCGGGgcggcgCCGGAggGGGCGGCgccGCGGg -3'
miRNA:   3'- aaaaCGCCCa-----GGUCU--CCCGUUG---CGCC- -5'
5994 5' -56.8 NC_001806.1 + 147107 0.66 0.870112
Target:  5'- ---cGCGGc-CCAGAa-GCAGCGCGGg -3'
miRNA:   3'- aaaaCGCCcaGGUCUccCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 146788 0.7 0.62845
Target:  5'- ---cGuCGGGUacUCGGGGGGCAucACGUGGu -3'
miRNA:   3'- aaaaC-GCCCA--GGUCUCCCGU--UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 146067 0.66 0.850226
Target:  5'- ---gGCGGccagaggccaggucaGUCCGGGcGGGCAGgcgcuCGCGGa -3'
miRNA:   3'- aaaaCGCC---------------CAGGUCU-CCCGUU-----GCGCC- -5'
5994 5' -56.8 NC_001806.1 + 145645 0.67 0.813597
Target:  5'- ---gGCGGGUgCCGGgggaccGGGGUGaucucuggcACGCGGg -3'
miRNA:   3'- aaaaCGCCCA-GGUC------UCCCGU---------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 143248 0.75 0.388864
Target:  5'- --gUGCGGGUUgGGGGGGgAugugggcggggguGCGCGGg -3'
miRNA:   3'- aaaACGCCCAGgUCUCCCgU-------------UGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 142170 0.66 0.869373
Target:  5'- --gUG-GGGUCCGacguggcgaugauGGGcGGCGGCGUGGu -3'
miRNA:   3'- aaaACgCCCAGGU-------------CUC-CCGUUGCGCC- -5'
5994 5' -56.8 NC_001806.1 + 142006 0.7 0.62845
Target:  5'- ---aGCGGGaCCAGccucuAGGGCGGCGaGGa -3'
miRNA:   3'- aaaaCGCCCaGGUC-----UCCCGUUGCgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.